Strain Fitness in Xanthobacter sp. DMC5 around GFF4878

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4875 and GFF4876 are separated by 209 nucleotidesGFF4876 and GFF4877 are separated by 93 nucleotidesGFF4877 and GFF4878 are separated by 127 nucleotidesGFF4878 and GFF4879 are separated by 57 nucleotidesGFF4879 and GFF4880 are separated by 73 nucleotides GFF4875 - hypothetical protein, at 25,103 to 25,327 GFF4875 GFF4876 - Glutaredoxin 4, at 25,537 to 25,866 GFF4876 GFF4877 - putative protein RP812, at 25,960 to 26,193 GFF4877 GFF4878 - hypothetical protein, at 26,321 to 27,295 GFF4878 GFF4879 - hypothetical protein, at 27,353 to 27,835 GFF4879 GFF4880 - hypothetical protein, at 27,909 to 28,304 GFF4880 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.348 kb on - strandat 25.401 kb on + strandat 25.401 kb on + strandat 25.402 kb on - strandat 25.402 kb on - strandat 25.475 kb on + strandat 25.475 kb on + strandat 25.476 kb on - strandat 25.476 kb on - strandat 25.637 kb on + strand, within GFF4876at 25.643 kb on + strand, within GFF4876at 25.643 kb on + strand, within GFF4876at 25.643 kb on + strand, within GFF4876at 25.643 kb on + strand, within GFF4876at 25.643 kb on + strand, within GFF4876at 25.644 kb on - strand, within GFF4876at 25.644 kb on - strand, within GFF4876at 25.674 kb on - strand, within GFF4876at 25.728 kb on - strand, within GFF4876at 25.728 kb on - strand, within GFF4876at 25.845 kb on + strandat 25.845 kb on + strandat 25.845 kb on + strandat 25.845 kb on + strandat 25.845 kb on + strandat 25.845 kb on + strandat 25.846 kb on - strandat 26.031 kb on - strand, within GFF4877at 26.096 kb on + strand, within GFF4877at 26.096 kb on + strand, within GFF4877at 26.097 kb on - strand, within GFF4877at 26.097 kb on - strand, within GFF4877at 26.267 kb on + strandat 26.362 kb on - strandat 26.398 kb on + strandat 26.398 kb on + strandat 26.445 kb on + strand, within GFF4878at 26.446 kb on - strand, within GFF4878at 26.615 kb on + strand, within GFF4878at 26.615 kb on + strand, within GFF4878at 26.616 kb on - strand, within GFF4878at 26.616 kb on - strand, within GFF4878at 26.616 kb on - strand, within GFF4878at 26.783 kb on + strand, within GFF4878at 26.783 kb on + strand, within GFF4878at 26.783 kb on + strand, within GFF4878at 27.036 kb on - strand, within GFF4878at 27.293 kb on + strandat 27.294 kb on - strandat 27.294 kb on - strandat 27.346 kb on + strandat 27.346 kb on + strandat 27.347 kb on - strandat 27.381 kb on - strandat 27.514 kb on - strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.651 kb on - strand, within GFF4879at 27.651 kb on - strand, within GFF4879at 27.651 kb on - strand, within GFF4879at 27.690 kb on - strand, within GFF4879at 27.690 kb on - strand, within GFF4879at 27.793 kb on - strandat 27.867 kb on + strandat 27.867 kb on + strandat 27.867 kb on + strandat 27.868 kb on - strandat 27.868 kb on - strandat 27.873 kb on - strandat 28.071 kb on + strand, within GFF4880at 28.071 kb on + strand, within GFF4880at 28.071 kb on + strand, within GFF4880at 28.072 kb on - strand, within GFF4880at 28.072 kb on - strand, within GFF4880

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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25,348 - -0.1
25,401 + +0.9
25,401 + +0.1
25,402 - -0.5
25,402 - +0.4
25,475 + +1.4
25,475 + +1.2
25,476 - +0.4
25,476 - -0.7
25,637 + GFF4876 0.30 +0.1
25,643 + GFF4876 0.32 +0.2
25,643 + GFF4876 0.32 -1.6
25,643 + GFF4876 0.32 -1.3
25,643 + GFF4876 0.32 -0.7
25,643 + GFF4876 0.32 +0.1
25,644 - GFF4876 0.32 +1.0
25,644 - GFF4876 0.32 -0.8
25,674 - GFF4876 0.42 +0.0
25,728 - GFF4876 0.58 -0.0
25,728 - GFF4876 0.58 +0.1
25,845 + +0.8
25,845 + +1.6
25,845 + +0.6
25,845 + -0.5
25,845 + +1.5
25,845 + +0.6
25,846 - +0.5
26,031 - GFF4877 0.30 -0.9
26,096 + GFF4877 0.58 +0.4
26,096 + GFF4877 0.58 +0.1
26,097 - GFF4877 0.59 +0.3
26,097 - GFF4877 0.59 +0.9
26,267 + -0.3
26,362 - -0.3
26,398 + +1.0
26,398 + +0.5
26,445 + GFF4878 0.13 -3.0
26,446 - GFF4878 0.13 -1.0
26,615 + GFF4878 0.30 -0.5
26,615 + GFF4878 0.30 -0.3
26,616 - GFF4878 0.30 +2.0
26,616 - GFF4878 0.30 +0.1
26,616 - GFF4878 0.30 -0.4
26,783 + GFF4878 0.47 +0.4
26,783 + GFF4878 0.47 -0.1
26,783 + GFF4878 0.47 +0.2
27,036 - GFF4878 0.73 -0.1
27,293 + +0.5
27,294 - -0.5
27,294 - -0.1
27,346 + -0.5
27,346 + +0.2
27,347 - +0.2
27,381 - +0.7
27,514 - GFF4879 0.33 -0.3
27,548 + GFF4879 0.40 +0.0
27,548 + GFF4879 0.40 +0.4
27,548 + GFF4879 0.40 +0.2
27,548 + GFF4879 0.40 +0.9
27,548 + GFF4879 0.40 +1.9
27,549 - GFF4879 0.41 -0.6
27,549 - GFF4879 0.41 +0.4
27,549 - GFF4879 0.41 +1.1
27,549 - GFF4879 0.41 +0.5
27,549 - GFF4879 0.41 -1.6
27,650 + GFF4879 0.61 +0.2
27,650 + GFF4879 0.61 +1.0
27,650 + GFF4879 0.61 +1.2
27,650 + GFF4879 0.61 -1.3
27,650 + GFF4879 0.61 +0.7
27,651 - GFF4879 0.62 -0.4
27,651 - GFF4879 0.62 -0.7
27,651 - GFF4879 0.62 +0.2
27,690 - GFF4879 0.70 +0.1
27,690 - GFF4879 0.70 +0.6
27,793 - +0.8
27,867 + -2.5
27,867 + -0.2
27,867 + +1.1
27,868 - -0.3
27,868 - -0.6
27,873 - +0.4
28,071 + GFF4880 0.41 -0.2
28,071 + GFF4880 0.41 -0.9
28,071 + GFF4880 0.41 +0.1
28,072 - GFF4880 0.41 -1.0
28,072 - GFF4880 0.41 +0.1

Or see this region's nucleotide sequence