Strain Fitness in Xanthobacter sp. DMC5 around GFF2868

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2867 and GFF2868 are separated by 88 nucleotidesGFF2868 and GFF2869 are separated by 84 nucleotidesGFF2869 and GFF2870 are separated by 31 nucleotides GFF2867 - 4-hydroxybenzoate transporter PcaK, at 583,819 to 585,201 GFF2867 GFF2868 - 2-keto-4-carboxy-3-hexenedioate hydratase, at 585,290 to 586,237 GFF2868 GFF2869 - hypothetical protein, at 586,322 to 587,158 GFF2869 GFF2870 - putative protein YisK, at 587,190 to 588,071 GFF2870 Position (kb) 585 586 587Strain fitness (log2 ratio) -2 -1 0 1at 584.342 kb on + strand, within GFF2867at 584.342 kb on + strand, within GFF2867at 584.342 kb on + strand, within GFF2867at 584.342 kb on + strand, within GFF2867at 584.399 kb on + strand, within GFF2867at 584.399 kb on + strand, within GFF2867at 584.400 kb on - strand, within GFF2867at 584.711 kb on + strand, within GFF2867at 584.711 kb on + strand, within GFF2867at 584.762 kb on + strand, within GFF2867at 584.762 kb on + strand, within GFF2867at 584.762 kb on + strand, within GFF2867at 584.763 kb on - strand, within GFF2867at 584.763 kb on - strand, within GFF2867at 584.763 kb on - strand, within GFF2867at 584.835 kb on - strand, within GFF2867at 585.186 kb on + strandat 585.187 kb on - strandat 585.726 kb on + strand, within GFF2868at 585.726 kb on + strand, within GFF2868at 585.727 kb on - strand, within GFF2868at 585.727 kb on - strand, within GFF2868at 585.727 kb on - strand, within GFF2868at 585.738 kb on + strand, within GFF2868at 585.738 kb on + strand, within GFF2868at 585.738 kb on + strand, within GFF2868at 585.739 kb on - strand, within GFF2868at 585.739 kb on - strand, within GFF2868at 585.739 kb on - strand, within GFF2868at 585.780 kb on + strand, within GFF2868at 585.780 kb on + strand, within GFF2868at 585.780 kb on + strand, within GFF2868at 585.780 kb on + strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.925 kb on - strand, within GFF2868at 585.925 kb on - strand, within GFF2868at 586.073 kb on + strand, within GFF2868at 586.074 kb on - strand, within GFF2868at 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.180 kb on - strandat 586.180 kb on - strandat 586.180 kb on - strandat 586.180 kb on - strandat 586.180 kb on - strandat 586.197 kb on + strandat 586.198 kb on - strandat 586.555 kb on - strand, within GFF2869at 586.555 kb on - strand, within GFF2869at 586.626 kb on + strand, within GFF2869at 586.626 kb on + strand, within GFF2869at 586.626 kb on + strand, within GFF2869at 586.626 kb on + strand, within GFF2869at 586.917 kb on + strand, within GFF2869at 586.917 kb on + strand, within GFF2869at 586.917 kb on + strand, within GFF2869at 586.918 kb on - strand, within GFF2869at 586.918 kb on - strand, within GFF2869at 586.918 kb on - strand, within GFF2869at 586.918 kb on - strand, within GFF2869at 586.986 kb on + strand, within GFF2869at 586.986 kb on + strand, within GFF2869at 586.987 kb on - strand, within GFF2869at 586.987 kb on - strand, within GFF2869at 586.987 kb on - strand, within GFF2869at 587.199 kb on - strandat 587.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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584,342 + GFF2867 0.38 -1.1
584,342 + GFF2867 0.38 -0.5
584,342 + GFF2867 0.38 -1.4
584,342 + GFF2867 0.38 +0.2
584,399 + GFF2867 0.42 +0.6
584,399 + GFF2867 0.42 +0.3
584,400 - GFF2867 0.42 -2.1
584,711 + GFF2867 0.64 +0.8
584,711 + GFF2867 0.64 +0.4
584,762 + GFF2867 0.68 -0.6
584,762 + GFF2867 0.68 -0.6
584,762 + GFF2867 0.68 -0.0
584,763 - GFF2867 0.68 +0.3
584,763 - GFF2867 0.68 +0.8
584,763 - GFF2867 0.68 +0.1
584,835 - GFF2867 0.73 -0.9
585,186 + +0.6
585,187 - -1.2
585,726 + GFF2868 0.46 +0.7
585,726 + GFF2868 0.46 -0.9
585,727 - GFF2868 0.46 -2.5
585,727 - GFF2868 0.46 +0.6
585,727 - GFF2868 0.46 +1.1
585,738 + GFF2868 0.47 +0.5
585,738 + GFF2868 0.47 +0.6
585,738 + GFF2868 0.47 -1.1
585,739 - GFF2868 0.47 -0.7
585,739 - GFF2868 0.47 +0.6
585,739 - GFF2868 0.47 -0.6
585,780 + GFF2868 0.52 +0.6
585,780 + GFF2868 0.52 +0.1
585,780 + GFF2868 0.52 -1.2
585,780 + GFF2868 0.52 -0.8
585,781 - GFF2868 0.52 -0.4
585,781 - GFF2868 0.52 -0.0
585,781 - GFF2868 0.52 -0.6
585,781 - GFF2868 0.52 +0.4
585,781 - GFF2868 0.52 +0.1
585,781 - GFF2868 0.52 +1.1
585,781 - GFF2868 0.52 +0.2
585,925 - GFF2868 0.67 +0.6
585,925 - GFF2868 0.67 -0.2
586,073 + GFF2868 0.83 -1.9
586,074 - GFF2868 0.83 +1.2
586,179 + +1.4
586,179 + +1.1
586,179 + -1.3
586,179 + +0.3
586,179 + -0.6
586,179 + -0.8
586,179 + -1.0
586,179 + -0.1
586,180 - +1.4
586,180 - -0.3
586,180 - -0.6
586,180 - +0.1
586,180 - +1.2
586,197 + -0.1
586,198 - -1.1
586,555 - GFF2869 0.28 -1.1
586,555 - GFF2869 0.28 -0.2
586,626 + GFF2869 0.36 -2.3
586,626 + GFF2869 0.36 +0.5
586,626 + GFF2869 0.36 -1.4
586,626 + GFF2869 0.36 +0.2
586,917 + GFF2869 0.71 -0.7
586,917 + GFF2869 0.71 +0.5
586,917 + GFF2869 0.71 -1.2
586,918 - GFF2869 0.71 +0.6
586,918 - GFF2869 0.71 -0.9
586,918 - GFF2869 0.71 -0.9
586,918 - GFF2869 0.71 +0.5
586,986 + GFF2869 0.79 +0.5
586,986 + GFF2869 0.79 +0.6
586,987 - GFF2869 0.79 -1.2
586,987 - GFF2869 0.79 -1.0
586,987 - GFF2869 0.79 -0.4
587,199 - -1.7
587,229 - +1.0

Or see this region's nucleotide sequence