Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2786 and GFF2787 are separated by 115 nucleotides GFF2787 and GFF2788 overlap by 4 nucleotides
GFF2786 - Allophanate hydrolase, at 488,800 to 490,176
GFF2786
GFF2787 - Nitrate import ATP-binding protein NrtD, at 490,292 to 491,167
GFF2787
GFF2788 - Taurine-binding periplasmic protein, at 491,164 to 492,180
GFF2788
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1 at 489.427 kb on + strand, within GFF2786 at 489.704 kb on - strand, within GFF2786 at 489.706 kb on + strand, within GFF2786 at 489.775 kb on + strand, within GFF2786 at 489.775 kb on + strand, within GFF2786 at 489.776 kb on - strand, within GFF2786 at 489.850 kb on + strand, within GFF2786 at 489.850 kb on + strand, within GFF2786 at 489.851 kb on - strand, within GFF2786 at 489.851 kb on - strand, within GFF2786 at 489.851 kb on - strand, within GFF2786 at 489.880 kb on + strand, within GFF2786 at 489.880 kb on + strand, within GFF2786 at 489.881 kb on - strand, within GFF2786 at 489.881 kb on - strand, within GFF2786 at 489.881 kb on - strand, within GFF2786 at 489.928 kb on + strand, within GFF2786 at 489.964 kb on + strand, within GFF2786 at 489.964 kb on + strand, within GFF2786 at 489.964 kb on + strand, within GFF2786 at 489.964 kb on + strand, within GFF2786 at 489.965 kb on - strand, within GFF2786 at 489.965 kb on - strand, within GFF2786 at 489.965 kb on - strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.022 kb on - strand, within GFF2786 at 490.022 kb on - strand, within GFF2786 at 490.027 kb on + strand, within GFF2786 at 490.027 kb on + strand, within GFF2786 at 490.027 kb on + strand, within GFF2786 at 490.028 kb on - strand, within GFF2786 at 490.638 kb on + strand, within GFF2787 at 490.638 kb on + strand, within GFF2787 at 490.639 kb on - strand, within GFF2787 at 490.639 kb on - strand, within GFF2787 at 490.702 kb on - strand, within GFF2787 at 491.056 kb on - strand, within GFF2787 at 491.056 kb on - strand, within GFF2787 at 491.056 kb on - strand, within GFF2787 at 491.189 kb on + strand at 491.189 kb on + strand at 491.321 kb on + strand, within GFF2788 at 491.321 kb on + strand, within GFF2788 at 491.322 kb on - strand, within GFF2788 at 491.406 kb on - strand, within GFF2788 at 491.450 kb on + strand, within GFF2788 at 491.451 kb on - strand, within GFF2788 at 491.502 kb on - strand, within GFF2788 at 491.731 kb on - strand, within GFF2788 at 491.750 kb on + strand, within GFF2788 at 491.750 kb on + strand, within GFF2788 at 491.750 kb on + strand, within GFF2788 at 491.751 kb on - strand, within GFF2788 at 491.882 kb on + strand, within GFF2788 at 491.882 kb on + strand, within GFF2788 at 491.883 kb on - strand, within GFF2788 at 492.000 kb on - strand, within GFF2788 at 492.071 kb on + strand, within GFF2788
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 489,427 + GFF2786 0.46 -1.4 489,704 - GFF2786 0.66 +0.6 489,706 + GFF2786 0.66 -0.5 489,775 + GFF2786 0.71 +0.3 489,775 + GFF2786 0.71 -1.0 489,776 - GFF2786 0.71 -0.4 489,850 + GFF2786 0.76 -0.3 489,850 + GFF2786 0.76 -0.5 489,851 - GFF2786 0.76 +0.3 489,851 - GFF2786 0.76 +0.6 489,851 - GFF2786 0.76 -0.1 489,880 + GFF2786 0.78 -0.3 489,880 + GFF2786 0.78 -1.1 489,881 - GFF2786 0.79 +0.7 489,881 - GFF2786 0.79 -1.0 489,881 - GFF2786 0.79 -1.5 489,928 + GFF2786 0.82 -0.3 489,964 + GFF2786 0.85 -0.5 489,964 + GFF2786 0.85 +0.2 489,964 + GFF2786 0.85 +0.4 489,964 + GFF2786 0.85 +0.3 489,965 - GFF2786 0.85 +0.2 489,965 - GFF2786 0.85 -0.5 489,965 - GFF2786 0.85 +1.1 490,021 + GFF2786 0.89 -0.6 490,021 + GFF2786 0.89 -1.7 490,021 + GFF2786 0.89 -0.2 490,021 + GFF2786 0.89 -1.4 490,021 + GFF2786 0.89 -0.3 490,021 + GFF2786 0.89 +0.4 490,022 - GFF2786 0.89 +0.4 490,022 - GFF2786 0.89 -0.1 490,027 + GFF2786 0.89 -1.2 490,027 + GFF2786 0.89 -1.0 490,027 + GFF2786 0.89 +0.1 490,028 - GFF2786 0.89 -0.1 490,638 + GFF2787 0.39 -1.4 490,638 + GFF2787 0.39 -0.0 490,639 - GFF2787 0.40 -0.5 490,639 - GFF2787 0.40 +0.3 490,702 - GFF2787 0.47 -0.0 491,056 - GFF2787 0.87 +1.0 491,056 - GFF2787 0.87 -1.1 491,056 - GFF2787 0.87 -1.8 491,189 + +0.3 491,189 + -0.1 491,321 + GFF2788 0.15 -0.9 491,321 + GFF2788 0.15 +0.2 491,322 - GFF2788 0.16 +0.5 491,406 - GFF2788 0.24 -2.3 491,450 + GFF2788 0.28 -0.4 491,451 - GFF2788 0.28 -1.8 491,502 - GFF2788 0.33 -0.1 491,731 - GFF2788 0.56 -0.7 491,750 + GFF2788 0.58 -0.2 491,750 + GFF2788 0.58 +0.1 491,750 + GFF2788 0.58 -0.6 491,751 - GFF2788 0.58 +0.2 491,882 + GFF2788 0.71 -0.6 491,882 + GFF2788 0.71 +0.1 491,883 - GFF2788 0.71 -1.4 492,000 - GFF2788 0.82 -0.1 492,071 + GFF2788 0.89 +0.8
Or see this region's nucleotide sequence