Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3908 and GFF3909 are separated by 455 nucleotides GFF3909 and GFF3910 are separated by 6 nucleotides GFF3910 and GFF3911 are separated by 171 nucleotides
GFF3908 - hypothetical protein, at 275,173 to 275,865
GFF3908
GFF3909 - hypothetical protein, at 276,321 to 276,998
GFF3909
GFF3910 - hypothetical protein, at 277,005 to 277,247
GFF3910
GFF3911 - Oxamate amidohydrolase proenzyme, at 277,419 to 279,026
GFF3911
Position (kb) 276
277 Strain fitness (log2 ratio) -1
0
1 at 275.903 kb on - strand at 275.974 kb on - strand at 275.974 kb on - strand at 276.118 kb on - strand at 276.118 kb on - strand at 276.281 kb on - strand at 276.633 kb on + strand, within GFF3909 at 276.633 kb on + strand, within GFF3909 at 276.634 kb on - strand, within GFF3909 at 276.687 kb on + strand, within GFF3909 at 276.687 kb on + strand, within GFF3909 at 276.688 kb on - strand, within GFF3909 at 277.046 kb on - strand, within GFF3910 at 277.060 kb on + strand, within GFF3910 at 277.096 kb on + strand, within GFF3910 at 277.096 kb on + strand, within GFF3910 at 277.096 kb on + strand, within GFF3910 at 277.333 kb on + strand at 277.333 kb on + strand at 277.333 kb on + strand at 277.333 kb on + strand at 277.334 kb on - strand at 277.334 kb on - strand at 277.334 kb on - strand at 277.334 kb on - strand at 277.438 kb on - strand at 277.438 kb on - strand at 277.576 kb on - strand at 277.576 kb on - strand at 277.644 kb on + strand, within GFF3911 at 277.644 kb on + strand, within GFF3911 at 277.645 kb on - strand, within GFF3911 at 277.647 kb on - strand, within GFF3911 at 277.649 kb on - strand, within GFF3911
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 275,903 - -0.1 275,974 - -1.6 275,974 - -1.5 276,118 - +0.5 276,118 - +0.4 276,281 - -0.1 276,633 + GFF3909 0.46 -0.6 276,633 + GFF3909 0.46 -0.1 276,634 - GFF3909 0.46 -0.6 276,687 + GFF3909 0.54 +0.8 276,687 + GFF3909 0.54 -0.6 276,688 - GFF3909 0.54 -0.3 277,046 - GFF3910 0.17 -1.1 277,060 + GFF3910 0.23 +1.6 277,096 + GFF3910 0.37 +0.2 277,096 + GFF3910 0.37 -0.4 277,096 + GFF3910 0.37 -0.0 277,333 + -0.3 277,333 + -0.8 277,333 + -0.6 277,333 + -0.9 277,334 - -0.6 277,334 - +0.5 277,334 - -0.1 277,334 - +0.1 277,438 - +0.3 277,438 - -1.0 277,576 - +0.3 277,576 - -0.7 277,644 + GFF3911 0.14 +0.4 277,644 + GFF3911 0.14 -0.5 277,645 - GFF3911 0.14 -0.3 277,647 - GFF3911 0.14 +0.5 277,649 - GFF3911 0.14 +1.2
Or see this region's nucleotide sequence