Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3860 and GFF3861 overlap by 4 nucleotides GFF3861 and GFF3862 overlap by 4 nucleotides GFF3862 and GFF3863 overlap by 4 nucleotides GFF3863 and GFF3864 are separated by 39 nucleotides
GFF3860 - Hydrazine synthase subunit beta, at 227,240 to 228,226
GFF3860
GFF3861 - Linearmycin resistance ATP-binding protein LnrL, at 228,223 to 229,026
GFF3861
GFF3862 - hypothetical protein, at 229,023 to 229,889
GFF3862
GFF3863 - hypothetical protein, at 229,886 to 230,521
GFF3863
GFF3864 - Hypoxanthine phosphoribosyltransferase, at 230,561 to 231,097
GFF3864
Position (kb) 229
230 Strain fitness (log2 ratio) -2
-1
0
1 at 228.410 kb on - strand, within GFF3861 at 228.547 kb on + strand, within GFF3861 at 228.865 kb on + strand, within GFF3861 at 228.865 kb on + strand, within GFF3861 at 229.086 kb on + strand at 229.251 kb on + strand, within GFF3862 at 229.251 kb on + strand, within GFF3862 at 229.251 kb on + strand, within GFF3862 at 229.251 kb on + strand, within GFF3862 at 229.251 kb on + strand, within GFF3862 at 229.251 kb on + strand, within GFF3862 at 229.251 kb on + strand, within GFF3862 at 229.251 kb on + strand, within GFF3862 at 229.252 kb on - strand, within GFF3862 at 229.252 kb on - strand, within GFF3862 at 229.252 kb on - strand, within GFF3862 at 229.252 kb on - strand, within GFF3862 at 229.252 kb on - strand, within GFF3862 at 229.269 kb on + strand, within GFF3862 at 229.269 kb on + strand, within GFF3862 at 229.270 kb on - strand, within GFF3862 at 229.270 kb on - strand, within GFF3862 at 229.338 kb on + strand, within GFF3862 at 229.338 kb on + strand, within GFF3862 at 229.339 kb on - strand, within GFF3862 at 229.339 kb on - strand, within GFF3862 at 229.395 kb on + strand, within GFF3862 at 229.395 kb on + strand, within GFF3862 at 229.396 kb on - strand, within GFF3862 at 229.396 kb on - strand, within GFF3862 at 229.396 kb on - strand, within GFF3862 at 229.449 kb on + strand, within GFF3862 at 229.449 kb on + strand, within GFF3862 at 229.449 kb on + strand, within GFF3862 at 229.449 kb on + strand, within GFF3862 at 229.450 kb on - strand, within GFF3862 at 229.450 kb on - strand, within GFF3862 at 229.503 kb on + strand, within GFF3862 at 229.504 kb on - strand, within GFF3862 at 229.653 kb on + strand, within GFF3862 at 229.693 kb on - strand, within GFF3862 at 229.693 kb on - strand, within GFF3862 at 229.830 kb on + strand at 230.213 kb on + strand, within GFF3863 at 230.265 kb on - strand, within GFF3863 at 230.432 kb on + strand, within GFF3863 at 230.432 kb on + strand, within GFF3863 at 230.432 kb on + strand, within GFF3863 at 230.432 kb on + strand, within GFF3863 at 230.433 kb on - strand, within GFF3863 at 230.433 kb on - strand, within GFF3863 at 230.433 kb on - strand, within GFF3863 at 230.524 kb on + strand at 230.525 kb on - strand at 230.525 kb on - strand at 230.629 kb on - strand, within GFF3864
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 228,410 - GFF3861 0.23 +0.4 228,547 + GFF3861 0.40 +0.2 228,865 + GFF3861 0.80 +0.4 228,865 + GFF3861 0.80 -0.8 229,086 + +0.3 229,251 + GFF3862 0.26 -0.5 229,251 + GFF3862 0.26 +0.9 229,251 + GFF3862 0.26 -0.1 229,251 + GFF3862 0.26 -0.7 229,251 + GFF3862 0.26 -1.4 229,251 + GFF3862 0.26 -0.5 229,251 + GFF3862 0.26 -0.9 229,251 + GFF3862 0.26 -0.9 229,252 - GFF3862 0.26 +0.2 229,252 - GFF3862 0.26 -1.2 229,252 - GFF3862 0.26 -0.1 229,252 - GFF3862 0.26 -0.4 229,252 - GFF3862 0.26 +0.6 229,269 + GFF3862 0.28 -1.1 229,269 + GFF3862 0.28 +0.0 229,270 - GFF3862 0.28 -1.3 229,270 - GFF3862 0.28 -0.7 229,338 + GFF3862 0.36 -0.7 229,338 + GFF3862 0.36 -0.9 229,339 - GFF3862 0.36 -2.7 229,339 - GFF3862 0.36 +0.2 229,395 + GFF3862 0.43 -0.8 229,395 + GFF3862 0.43 -0.7 229,396 - GFF3862 0.43 -0.1 229,396 - GFF3862 0.43 +1.0 229,396 - GFF3862 0.43 -1.0 229,449 + GFF3862 0.49 -0.5 229,449 + GFF3862 0.49 +0.2 229,449 + GFF3862 0.49 -0.1 229,449 + GFF3862 0.49 -0.3 229,450 - GFF3862 0.49 -1.5 229,450 - GFF3862 0.49 -1.1 229,503 + GFF3862 0.55 -0.0 229,504 - GFF3862 0.55 -1.0 229,653 + GFF3862 0.73 -0.9 229,693 - GFF3862 0.77 -0.5 229,693 - GFF3862 0.77 -1.2 229,830 + -0.1 230,213 + GFF3863 0.51 +0.3 230,265 - GFF3863 0.60 +0.9 230,432 + GFF3863 0.86 -1.4 230,432 + GFF3863 0.86 +0.7 230,432 + GFF3863 0.86 -0.4 230,432 + GFF3863 0.86 +0.5 230,433 - GFF3863 0.86 -0.3 230,433 - GFF3863 0.86 -0.1 230,433 - GFF3863 0.86 -0.1 230,524 + +0.4 230,525 - +0.1 230,525 - -0.1 230,629 - GFF3864 0.13 +0.2
Or see this region's nucleotide sequence