Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3857 and GFF3858 are separated by 54 nucleotides GFF3858 and GFF3859 are separated by 160 nucleotides GFF3859 and GFF3860 are separated by 64 nucleotides
GFF3857 - hypothetical protein, at 224,595 to 225,131
GFF3857
GFF3858 - hypothetical protein, at 225,186 to 225,737
GFF3858
GFF3859 - hypothetical protein, at 225,898 to 227,175
GFF3859
GFF3860 - Hydrazine synthase subunit beta, at 227,240 to 228,226
GFF3860
Position (kb) 225
226
227
228 Strain fitness (log2 ratio) -1
0
1
2 at 225.239 kb on - strand at 225.281 kb on + strand, within GFF3858 at 225.458 kb on - strand, within GFF3858 at 225.612 kb on - strand, within GFF3858 at 225.621 kb on + strand, within GFF3858 at 225.622 kb on - strand, within GFF3858 at 225.803 kb on - strand at 225.851 kb on - strand at 226.121 kb on - strand, within GFF3859 at 226.543 kb on + strand, within GFF3859 at 226.543 kb on + strand, within GFF3859 at 226.543 kb on + strand, within GFF3859 at 226.732 kb on + strand, within GFF3859 at 226.732 kb on + strand, within GFF3859 at 226.732 kb on + strand, within GFF3859 at 226.732 kb on + strand, within GFF3859 at 226.733 kb on - strand, within GFF3859 at 226.733 kb on - strand, within GFF3859 at 226.733 kb on - strand, within GFF3859 at 226.733 kb on - strand, within GFF3859 at 227.174 kb on + strand at 227.321 kb on + strand at 227.322 kb on - strand at 227.323 kb on + strand at 227.330 kb on + strand at 227.330 kb on + strand at 227.331 kb on - strand at 227.331 kb on - strand at 227.582 kb on + strand, within GFF3860 at 227.762 kb on + strand, within GFF3860
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 225,239 - +1.8 225,281 + GFF3858 0.17 -1.2 225,458 - GFF3858 0.49 -0.3 225,612 - GFF3858 0.77 -0.1 225,621 + GFF3858 0.79 -0.6 225,622 - GFF3858 0.79 +0.3 225,803 - +0.5 225,851 - -1.1 226,121 - GFF3859 0.17 -1.3 226,543 + GFF3859 0.50 +0.3 226,543 + GFF3859 0.50 -0.2 226,543 + GFF3859 0.50 -1.1 226,732 + GFF3859 0.65 -1.3 226,732 + GFF3859 0.65 -0.1 226,732 + GFF3859 0.65 -0.5 226,732 + GFF3859 0.65 -0.4 226,733 - GFF3859 0.65 +0.2 226,733 - GFF3859 0.65 -0.5 226,733 - GFF3859 0.65 -1.6 226,733 - GFF3859 0.65 -0.9 227,174 + -0.6 227,321 + +0.3 227,322 - -0.0 227,323 + -0.2 227,330 + +0.3 227,330 + -1.0 227,331 - -0.5 227,331 - -0.6 227,582 + GFF3860 0.35 -0.6 227,762 + GFF3860 0.53 -0.5
Or see this region's nucleotide sequence