Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3807 and GFF3808 are separated by 276 nucleotides GFF3808 and GFF3809 overlap by 29 nucleotides GFF3809 and GFF3810 overlap by 4 nucleotides GFF3810 and GFF3811 are separated by 137 nucleotides
GFF3807 - Methanol dehydrogenase [cytochrome c] subunit 1, at 164,967 to 166,772
GFF3807
GFF3808 - hypothetical protein, at 167,049 to 167,591
GFF3808
GFF3809 - hypothetical protein, at 167,563 to 168,456
GFF3809
GFF3810 - hypothetical protein, at 168,453 to 169,067
GFF3810
GFF3811 - hypothetical protein, at 169,205 to 170,053
GFF3811
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.590 kb on + strand, within GFF3807 at 166.590 kb on + strand, within GFF3807 at 166.590 kb on + strand, within GFF3807 at 166.591 kb on - strand, within GFF3807 at 166.611 kb on + strand at 166.611 kb on + strand at 166.611 kb on + strand at 166.726 kb on - strand at 166.726 kb on - strand at 166.785 kb on - strand at 167.188 kb on - strand, within GFF3808 at 167.190 kb on + strand, within GFF3808 at 167.214 kb on + strand, within GFF3808 at 167.215 kb on + strand, within GFF3808 at 167.215 kb on - strand, within GFF3808 at 167.215 kb on - strand, within GFF3808 at 167.215 kb on - strand, within GFF3808 at 167.215 kb on - strand, within GFF3808 at 167.253 kb on + strand, within GFF3808 at 167.262 kb on + strand, within GFF3808 at 167.322 kb on + strand, within GFF3808 at 167.463 kb on + strand, within GFF3808 at 167.464 kb on - strand, within GFF3808 at 167.464 kb on - strand, within GFF3808 at 167.478 kb on + strand, within GFF3808 at 167.478 kb on + strand, within GFF3808 at 167.478 kb on + strand, within GFF3808 at 167.478 kb on + strand, within GFF3808 at 167.479 kb on - strand, within GFF3808 at 167.479 kb on - strand, within GFF3808 at 167.479 kb on - strand, within GFF3808 at 167.485 kb on - strand, within GFF3808 at 167.824 kb on + strand, within GFF3809 at 167.825 kb on - strand, within GFF3809 at 167.825 kb on - strand, within GFF3809 at 167.825 kb on - strand, within GFF3809 at 167.825 kb on - strand, within GFF3809 at 168.096 kb on + strand, within GFF3809 at 168.096 kb on + strand, within GFF3809 at 168.096 kb on + strand, within GFF3809 at 168.096 kb on + strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.100 kb on + strand, within GFF3809 at 168.101 kb on - strand, within GFF3809 at 168.124 kb on + strand, within GFF3809 at 168.124 kb on + strand, within GFF3809 at 168.125 kb on - strand, within GFF3809 at 168.846 kb on - strand, within GFF3810 at 168.861 kb on + strand, within GFF3810 at 168.862 kb on - strand, within GFF3810 at 168.862 kb on - strand, within GFF3810 at 168.975 kb on + strand, within GFF3810 at 168.976 kb on - strand, within GFF3810 at 168.981 kb on + strand, within GFF3810 at 168.982 kb on - strand, within GFF3810 at 169.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 166,590 + GFF3807 0.90 +1.7 166,590 + GFF3807 0.90 +1.4 166,590 + GFF3807 0.90 +0.9 166,591 - GFF3807 0.90 +1.9 166,611 + +1.3 166,611 + +2.2 166,611 + +1.2 166,726 - +1.5 166,726 - +1.1 166,785 - -0.5 167,188 - GFF3808 0.26 +0.2 167,190 + GFF3808 0.26 +0.5 167,214 + GFF3808 0.30 -0.8 167,215 + GFF3808 0.31 -0.2 167,215 - GFF3808 0.31 -0.2 167,215 - GFF3808 0.31 +0.0 167,215 - GFF3808 0.31 +0.2 167,215 - GFF3808 0.31 -0.1 167,253 + GFF3808 0.38 -0.0 167,262 + GFF3808 0.39 -0.3 167,322 + GFF3808 0.50 -0.3 167,463 + GFF3808 0.76 -0.9 167,464 - GFF3808 0.76 +0.5 167,464 - GFF3808 0.76 -0.7 167,478 + GFF3808 0.79 -0.3 167,478 + GFF3808 0.79 -0.4 167,478 + GFF3808 0.79 +0.3 167,478 + GFF3808 0.79 -0.3 167,479 - GFF3808 0.79 -0.5 167,479 - GFF3808 0.79 -0.3 167,479 - GFF3808 0.79 -0.2 167,485 - GFF3808 0.80 +0.1 167,824 + GFF3809 0.29 +0.0 167,825 - GFF3809 0.29 +0.0 167,825 - GFF3809 0.29 -0.3 167,825 - GFF3809 0.29 -0.7 167,825 - GFF3809 0.29 -0.2 168,096 + GFF3809 0.60 +1.2 168,096 + GFF3809 0.60 -0.3 168,096 + GFF3809 0.60 -1.0 168,096 + GFF3809 0.60 -1.1 168,097 - GFF3809 0.60 -1.4 168,097 - GFF3809 0.60 -0.9 168,097 - GFF3809 0.60 +0.4 168,097 - GFF3809 0.60 -1.2 168,097 - GFF3809 0.60 -1.2 168,097 - GFF3809 0.60 -2.1 168,100 + GFF3809 0.60 -0.7 168,101 - GFF3809 0.60 +0.7 168,124 + GFF3809 0.63 -0.9 168,124 + GFF3809 0.63 -0.1 168,125 - GFF3809 0.63 -0.5 168,846 - GFF3810 0.64 +0.1 168,861 + GFF3810 0.66 +0.1 168,862 - GFF3810 0.67 -0.1 168,862 - GFF3810 0.67 -0.8 168,975 + GFF3810 0.85 +0.0 168,976 - GFF3810 0.85 -0.9 168,981 + GFF3810 0.86 -0.6 168,982 - GFF3810 0.86 -0.2 169,216 - -0.2
Or see this region's nucleotide sequence