Strain Fitness in Xanthobacter sp. DMC5 around GFF3644

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3643 and GFF3644 are separated by 685 nucleotidesGFF3644 and GFF3645 are separated by 5 nucleotides GFF3643 - hypothetical protein, at 510,192 to 511,067 GFF3643 GFF3644 - hypothetical protein, at 511,753 to 512,181 GFF3644 GFF3645 - Conjugal transfer protein TraG, at 512,187 to 514,166 GFF3645 Position (kb) 511 512 513Strain fitness (log2 ratio) -1 0 1at 510.791 kb on + strand, within GFF3643at 510.791 kb on + strand, within GFF3643at 510.791 kb on + strand, within GFF3643at 510.791 kb on + strand, within GFF3643at 510.792 kb on - strand, within GFF3643at 510.853 kb on + strand, within GFF3643at 510.853 kb on + strand, within GFF3643at 510.853 kb on + strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.854 kb on - strand, within GFF3643at 510.912 kb on + strand, within GFF3643at 510.912 kb on + strand, within GFF3643at 510.913 kb on - strand, within GFF3643at 510.913 kb on - strand, within GFF3643at 510.913 kb on - strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.919 kb on + strand, within GFF3643at 510.920 kb on - strand, within GFF3643at 510.920 kb on - strand, within GFF3643at 510.920 kb on - strand, within GFF3643at 510.920 kb on - strand, within GFF3643at 510.979 kb on + strand, within GFF3643at 510.980 kb on - strandat 510.980 kb on - strandat 510.990 kb on + strandat 510.991 kb on - strandat 510.991 kb on - strandat 511.093 kb on + strandat 511.109 kb on + strandat 511.110 kb on - strandat 511.136 kb on + strandat 511.136 kb on + strandat 511.136 kb on + strandat 511.136 kb on + strandat 511.137 kb on - strandat 511.137 kb on - strandat 511.185 kb on + strandat 511.186 kb on - strandat 511.186 kb on - strandat 511.265 kb on + strandat 511.326 kb on + strandat 511.327 kb on - strandat 511.338 kb on + strandat 511.341 kb on + strandat 511.341 kb on + strandat 511.341 kb on + strandat 511.370 kb on + strandat 511.370 kb on + strandat 511.431 kb on + strandat 511.431 kb on + strandat 511.432 kb on - strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.560 kb on + strandat 511.560 kb on + strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.605 kb on + strandat 511.612 kb on + strandat 511.625 kb on - strandat 511.625 kb on - strandat 511.641 kb on + strandat 511.641 kb on + strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.657 kb on - strandat 511.696 kb on + strandat 511.742 kb on + strandat 511.800 kb on + strand, within GFF3644at 511.801 kb on - strand, within GFF3644at 511.801 kb on - strand, within GFF3644at 511.848 kb on - strand, within GFF3644at 511.947 kb on + strand, within GFF3644at 512.144 kb on + strandat 512.144 kb on + strandat 512.145 kb on - strandat 512.150 kb on + strandat 512.198 kb on + strandat 512.199 kb on - strandat 512.536 kb on + strand, within GFF3645at 512.536 kb on + strand, within GFF3645at 512.536 kb on + strand, within GFF3645at 512.537 kb on - strand, within GFF3645at 512.537 kb on - strand, within GFF3645at 512.537 kb on - strand, within GFF3645at 512.539 kb on + strand, within GFF3645at 512.540 kb on - strand, within GFF3645at 512.540 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.831 kb on - strand, within GFF3645at 512.831 kb on - strand, within GFF3645at 512.831 kb on - strand, within GFF3645at 512.839 kb on + strand, within GFF3645at 512.949 kb on + strand, within GFF3645at 512.950 kb on - strand, within GFF3645at 512.950 kb on - strand, within GFF3645at 512.950 kb on - strand, within GFF3645at 513.079 kb on + strand, within GFF3645at 513.079 kb on + strand, within GFF3645at 513.079 kb on + strand, within GFF3645at 513.079 kb on + strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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510,791 + GFF3643 0.68 +0.3
510,791 + GFF3643 0.68 -0.2
510,791 + GFF3643 0.68 -1.2
510,791 + GFF3643 0.68 +0.0
510,792 - GFF3643 0.68 +0.1
510,853 + GFF3643 0.75 +0.4
510,853 + GFF3643 0.75 +0.8
510,853 + GFF3643 0.75 -0.3
510,854 - GFF3643 0.76 +0.3
510,854 - GFF3643 0.76 +0.7
510,854 - GFF3643 0.76 +1.5
510,854 - GFF3643 0.76 +0.7
510,854 - GFF3643 0.76 +0.7
510,854 - GFF3643 0.76 -0.5
510,854 - GFF3643 0.76 -1.3
510,912 + GFF3643 0.82 +0.5
510,912 + GFF3643 0.82 -0.2
510,913 - GFF3643 0.82 -0.1
510,913 - GFF3643 0.82 -0.9
510,913 - GFF3643 0.82 -0.1
510,919 + GFF3643 0.83 +0.0
510,919 + GFF3643 0.83 -0.2
510,919 + GFF3643 0.83 +0.4
510,919 + GFF3643 0.83 +0.0
510,919 + GFF3643 0.83 -0.0
510,920 - GFF3643 0.83 +0.6
510,920 - GFF3643 0.83 +1.1
510,920 - GFF3643 0.83 -0.6
510,920 - GFF3643 0.83 +0.2
510,979 + GFF3643 0.90 +0.4
510,980 - -0.0
510,980 - +0.1
510,990 + +1.1
510,991 - -0.2
510,991 - +0.4
511,093 + +0.5
511,109 + +0.1
511,110 - -0.3
511,136 + +0.1
511,136 + +0.7
511,136 + +0.2
511,136 + +0.7
511,137 - -0.0
511,137 - +0.0
511,185 + +0.0
511,186 - +1.0
511,186 - -0.7
511,265 + +1.0
511,326 + +0.5
511,327 - +0.1
511,338 + +0.3
511,341 + -0.3
511,341 + +0.1
511,341 + +0.4
511,370 + +1.1
511,370 + -0.4
511,431 + -0.4
511,431 + -0.5
511,432 - +1.1
511,496 + -0.4
511,496 + -0.4
511,496 + -0.1
511,496 + -0.6
511,560 + +0.6
511,560 + -0.4
511,561 - +1.1
511,561 - +1.0
511,561 - +0.3
511,561 - +0.2
511,561 - +0.6
511,605 + -0.2
511,612 + -0.7
511,625 - +0.1
511,625 - +0.7
511,641 + -0.1
511,641 + +0.0
511,642 - +0.1
511,642 - +0.2
511,642 - +0.3
511,642 - +0.1
511,642 - +0.8
511,642 - +0.0
511,657 - -0.1
511,696 + -0.7
511,742 + +0.2
511,800 + GFF3644 0.11 -0.9
511,801 - GFF3644 0.11 -0.3
511,801 - GFF3644 0.11 -0.0
511,848 - GFF3644 0.22 -0.1
511,947 + GFF3644 0.45 -0.3
512,144 + -1.3
512,144 + +0.5
512,145 - +0.3
512,150 + -1.2
512,198 + -0.4
512,199 - +1.5
512,536 + GFF3645 0.18 -0.4
512,536 + GFF3645 0.18 -0.1
512,536 + GFF3645 0.18 +0.0
512,537 - GFF3645 0.18 -0.1
512,537 - GFF3645 0.18 +0.1
512,537 - GFF3645 0.18 -0.4
512,539 + GFF3645 0.18 -0.0
512,540 - GFF3645 0.18 +0.0
512,540 - GFF3645 0.18 -0.9
512,702 - GFF3645 0.26 -0.9
512,702 - GFF3645 0.26 +0.1
512,702 - GFF3645 0.26 -0.3
512,702 - GFF3645 0.26 -1.4
512,702 - GFF3645 0.26 +0.6
512,702 - GFF3645 0.26 -0.4
512,702 - GFF3645 0.26 -0.3
512,702 - GFF3645 0.26 -1.3
512,702 - GFF3645 0.26 -0.6
512,830 + GFF3645 0.32 +0.4
512,830 + GFF3645 0.32 -0.8
512,830 + GFF3645 0.32 +1.1
512,830 + GFF3645 0.32 -0.8
512,830 + GFF3645 0.32 +0.6
512,831 - GFF3645 0.33 -0.4
512,831 - GFF3645 0.33 -0.7
512,831 - GFF3645 0.33 -0.3
512,839 + GFF3645 0.33 -1.0
512,949 + GFF3645 0.38 -1.2
512,950 - GFF3645 0.39 -0.7
512,950 - GFF3645 0.39 -0.3
512,950 - GFF3645 0.39 -0.2
513,079 + GFF3645 0.45 -0.4
513,079 + GFF3645 0.45 -0.9
513,079 + GFF3645 0.45 -0.6
513,079 + GFF3645 0.45 -0.8
513,080 - GFF3645 0.45 +0.7
513,080 - GFF3645 0.45 +0.4
513,080 - GFF3645 0.45 -0.1
513,080 - GFF3645 0.45 -0.1
513,080 - GFF3645 0.45 +0.3
513,080 - GFF3645 0.45 -0.4
513,080 - GFF3645 0.45 +0.7

Or see this region's nucleotide sequence