Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3429 and GFF3430 are separated by 97 nucleotides GFF3430 and GFF3431 are separated by 150 nucleotides
GFF3429 - HTH-type transcriptional regulator CdhR, at 279,065 to 280,168
GFF3429
GFF3430 - L-serine dehydratase 2, at 280,266 to 281,612
GFF3430
GFF3431 - Serine hydroxymethyltransferase 2, at 281,763 to 283,037
GFF3431
Position (kb) 280
281
282 Strain fitness (log2 ratio) -1
0
1 at 279.285 kb on + strand, within GFF3429 at 279.285 kb on + strand, within GFF3429 at 279.285 kb on + strand, within GFF3429 at 279.286 kb on - strand, within GFF3429 at 279.286 kb on - strand, within GFF3429 at 279.678 kb on + strand, within GFF3429 at 279.678 kb on + strand, within GFF3429 at 279.684 kb on + strand, within GFF3429 at 279.684 kb on + strand, within GFF3429 at 279.685 kb on - strand, within GFF3429 at 279.685 kb on - strand, within GFF3429 at 279.796 kb on - strand, within GFF3429 at 279.796 kb on - strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.857 kb on - strand, within GFF3429 at 279.857 kb on - strand, within GFF3429 at 279.857 kb on - strand, within GFF3429 at 279.858 kb on + strand, within GFF3429 at 279.858 kb on + strand, within GFF3429 at 279.858 kb on + strand, within GFF3429 at 279.858 kb on + strand, within GFF3429 at 279.859 kb on - strand, within GFF3429 at 279.859 kb on - strand, within GFF3429 at 280.276 kb on + strand at 280.604 kb on + strand, within GFF3430 at 280.604 kb on + strand, within GFF3430 at 280.605 kb on - strand, within GFF3430 at 280.605 kb on - strand, within GFF3430 at 280.680 kb on + strand, within GFF3430 at 280.680 kb on + strand, within GFF3430 at 280.681 kb on - strand, within GFF3430 at 281.143 kb on - strand, within GFF3430 at 281.563 kb on - strand at 281.658 kb on - strand at 281.740 kb on - strand at 281.925 kb on + strand, within GFF3431 at 281.925 kb on + strand, within GFF3431 at 281.925 kb on + strand, within GFF3431 at 281.925 kb on + strand, within GFF3431 at 281.955 kb on + strand, within GFF3431 at 282.031 kb on - strand, within GFF3431 at 282.104 kb on + strand, within GFF3431 at 282.229 kb on - strand, within GFF3431 at 282.229 kb on - strand, within GFF3431 at 282.229 kb on - strand, within GFF3431 at 282.402 kb on + strand, within GFF3431 at 282.402 kb on + strand, within GFF3431 at 282.402 kb on + strand, within GFF3431 at 282.402 kb on + strand, within GFF3431 at 282.403 kb on - strand, within GFF3431
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 279,285 + GFF3429 0.20 +0.1 279,285 + GFF3429 0.20 +0.2 279,285 + GFF3429 0.20 -1.2 279,286 - GFF3429 0.20 -0.4 279,286 - GFF3429 0.20 +0.4 279,678 + GFF3429 0.56 +0.4 279,678 + GFF3429 0.56 +0.6 279,684 + GFF3429 0.56 +1.0 279,684 + GFF3429 0.56 +0.7 279,685 - GFF3429 0.56 +0.4 279,685 - GFF3429 0.56 +0.2 279,796 - GFF3429 0.66 -0.1 279,796 - GFF3429 0.66 -0.0 279,856 + GFF3429 0.72 +1.1 279,856 + GFF3429 0.72 -0.9 279,856 + GFF3429 0.72 -0.5 279,856 + GFF3429 0.72 -0.5 279,856 + GFF3429 0.72 -0.6 279,857 - GFF3429 0.72 -1.1 279,857 - GFF3429 0.72 +0.1 279,857 - GFF3429 0.72 +1.3 279,858 + GFF3429 0.72 -0.3 279,858 + GFF3429 0.72 -0.6 279,858 + GFF3429 0.72 -0.3 279,858 + GFF3429 0.72 -0.6 279,859 - GFF3429 0.72 +0.5 279,859 - GFF3429 0.72 -0.8 280,276 + -1.7 280,604 + GFF3430 0.25 +0.7 280,604 + GFF3430 0.25 -1.3 280,605 - GFF3430 0.25 -0.2 280,605 - GFF3430 0.25 +0.1 280,680 + GFF3430 0.31 -0.0 280,680 + GFF3430 0.31 -0.2 280,681 - GFF3430 0.31 +1.1 281,143 - GFF3430 0.65 -0.9 281,563 - -0.3 281,658 - +0.4 281,740 - -0.6 281,925 + GFF3431 0.13 +0.4 281,925 + GFF3431 0.13 +0.4 281,925 + GFF3431 0.13 +0.8 281,925 + GFF3431 0.13 -0.1 281,955 + GFF3431 0.15 +0.6 282,031 - GFF3431 0.21 -0.9 282,104 + GFF3431 0.27 +0.0 282,229 - GFF3431 0.37 +0.0 282,229 - GFF3431 0.37 -0.7 282,229 - GFF3431 0.37 -0.0 282,402 + GFF3431 0.50 -0.5 282,402 + GFF3431 0.50 -0.1 282,402 + GFF3431 0.50 +0.0 282,402 + GFF3431 0.50 +1.4 282,403 - GFF3431 0.50 +0.7
Or see this region's nucleotide sequence