Strain Fitness in Xanthobacter sp. DMC5 around GFF3257

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3255 and GFF3256 are separated by 6 nucleotidesGFF3256 and GFF3257 are separated by 52 nucleotidesGFF3257 and GFF3258 are separated by 58 nucleotides GFF3255 - hypothetical protein, at 86,727 to 87,224 GFF3255 GFF3256 - Arsenate reductase, at 87,231 to 87,692 GFF3256 GFF3257 - hypothetical protein, at 87,745 to 88,770 GFF3257 GFF3258 - hypothetical protein, at 88,829 to 89,992 GFF3258 Position (kb) 87 88 89Strain fitness (log2 ratio) -1 0 1 2at 86.901 kb on + strand, within GFF3255at 87.022 kb on - strand, within GFF3255at 87.022 kb on - strand, within GFF3255at 87.022 kb on - strand, within GFF3255at 87.022 kb on - strand, within GFF3255at 87.042 kb on + strand, within GFF3255at 87.042 kb on + strand, within GFF3255at 87.042 kb on + strand, within GFF3255at 87.042 kb on + strand, within GFF3255at 87.043 kb on - strand, within GFF3255at 87.045 kb on + strand, within GFF3255at 87.045 kb on + strand, within GFF3255at 87.045 kb on + strand, within GFF3255at 87.045 kb on + strand, within GFF3255at 87.046 kb on - strand, within GFF3255at 87.046 kb on - strand, within GFF3255at 87.046 kb on - strand, within GFF3255at 87.357 kb on + strand, within GFF3256at 87.357 kb on + strand, within GFF3256at 87.358 kb on - strand, within GFF3256at 87.358 kb on - strand, within GFF3256at 87.358 kb on - strand, within GFF3256at 87.358 kb on - strand, within GFF3256at 87.358 kb on - strand, within GFF3256at 87.358 kb on - strand, within GFF3256at 87.477 kb on + strand, within GFF3256at 87.477 kb on + strand, within GFF3256at 87.478 kb on - strand, within GFF3256at 87.478 kb on - strand, within GFF3256at 87.478 kb on - strand, within GFF3256at 87.478 kb on - strand, within GFF3256at 87.478 kb on - strand, within GFF3256at 87.573 kb on + strand, within GFF3256at 87.573 kb on + strand, within GFF3256at 87.574 kb on - strand, within GFF3256at 87.842 kb on - strandat 87.965 kb on + strand, within GFF3257at 87.965 kb on + strand, within GFF3257at 87.966 kb on - strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.097 kb on + strand, within GFF3257at 88.098 kb on - strand, within GFF3257at 88.098 kb on - strand, within GFF3257at 88.212 kb on + strand, within GFF3257at 88.213 kb on - strand, within GFF3257at 88.214 kb on + strand, within GFF3257at 88.214 kb on + strand, within GFF3257at 88.214 kb on + strand, within GFF3257at 88.215 kb on - strand, within GFF3257at 88.215 kb on - strand, within GFF3257at 88.215 kb on - strand, within GFF3257at 88.215 kb on - strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.337 kb on + strand, within GFF3257at 88.338 kb on - strand, within GFF3257at 88.338 kb on - strand, within GFF3257at 88.338 kb on - strand, within GFF3257at 88.491 kb on - strand, within GFF3257at 88.718 kb on + strandat 88.719 kb on - strandat 89.040 kb on + strand, within GFF3258at 89.041 kb on - strand, within GFF3258at 89.041 kb on - strand, within GFF3258at 89.087 kb on + strand, within GFF3258at 89.230 kb on - strand, within GFF3258at 89.362 kb on - strand, within GFF3258at 89.442 kb on + strand, within GFF3258at 89.442 kb on + strand, within GFF3258at 89.448 kb on + strand, within GFF3258at 89.449 kb on - strand, within GFF3258at 89.449 kb on - strand, within GFF3258at 89.673 kb on + strand, within GFF3258

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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86,901 + GFF3255 0.35 +0.6
87,022 - GFF3255 0.59 +0.1
87,022 - GFF3255 0.59 -0.6
87,022 - GFF3255 0.59 -1.1
87,022 - GFF3255 0.59 -0.1
87,042 + GFF3255 0.63 -0.1
87,042 + GFF3255 0.63 -0.1
87,042 + GFF3255 0.63 -0.3
87,042 + GFF3255 0.63 +0.5
87,043 - GFF3255 0.63 -1.2
87,045 + GFF3255 0.64 +1.9
87,045 + GFF3255 0.64 -0.0
87,045 + GFF3255 0.64 -0.6
87,045 + GFF3255 0.64 -1.3
87,046 - GFF3255 0.64 -0.2
87,046 - GFF3255 0.64 +0.1
87,046 - GFF3255 0.64 +1.0
87,357 + GFF3256 0.27 +1.0
87,357 + GFF3256 0.27 +1.7
87,358 - GFF3256 0.27 +0.8
87,358 - GFF3256 0.27 +0.9
87,358 - GFF3256 0.27 +1.4
87,358 - GFF3256 0.27 +0.5
87,358 - GFF3256 0.27 +0.6
87,358 - GFF3256 0.27 +0.6
87,477 + GFF3256 0.53 +1.1
87,477 + GFF3256 0.53 +0.9
87,478 - GFF3256 0.53 +0.6
87,478 - GFF3256 0.53 +1.0
87,478 - GFF3256 0.53 +1.3
87,478 - GFF3256 0.53 +1.0
87,478 - GFF3256 0.53 +1.3
87,573 + GFF3256 0.74 +0.4
87,573 + GFF3256 0.74 +1.8
87,574 - GFF3256 0.74 +1.4
87,842 - +0.6
87,965 + GFF3257 0.21 -0.2
87,965 + GFF3257 0.21 +0.1
87,966 - GFF3257 0.22 -0.2
88,097 + GFF3257 0.34 -1.3
88,097 + GFF3257 0.34 -0.2
88,097 + GFF3257 0.34 +0.2
88,097 + GFF3257 0.34 +0.1
88,097 + GFF3257 0.34 +1.1
88,098 - GFF3257 0.34 -0.6
88,098 - GFF3257 0.34 +0.5
88,212 + GFF3257 0.46 +0.2
88,213 - GFF3257 0.46 -0.1
88,214 + GFF3257 0.46 -0.3
88,214 + GFF3257 0.46 -0.0
88,214 + GFF3257 0.46 -0.3
88,215 - GFF3257 0.46 +0.5
88,215 - GFF3257 0.46 +0.2
88,215 - GFF3257 0.46 +0.5
88,215 - GFF3257 0.46 +0.5
88,337 + GFF3257 0.58 +0.4
88,337 + GFF3257 0.58 +0.2
88,337 + GFF3257 0.58 -0.6
88,337 + GFF3257 0.58 -0.1
88,337 + GFF3257 0.58 +0.2
88,338 - GFF3257 0.58 +0.3
88,338 - GFF3257 0.58 -0.0
88,338 - GFF3257 0.58 +0.5
88,491 - GFF3257 0.73 -0.5
88,718 + +0.3
88,719 - +0.3
89,040 + GFF3258 0.18 -0.4
89,041 - GFF3258 0.18 -0.2
89,041 - GFF3258 0.18 -0.8
89,087 + GFF3258 0.22 -0.8
89,230 - GFF3258 0.34 +0.2
89,362 - GFF3258 0.46 +0.2
89,442 + GFF3258 0.53 +0.2
89,442 + GFF3258 0.53 +0.3
89,448 + GFF3258 0.53 +0.5
89,449 - GFF3258 0.53 +0.1
89,449 - GFF3258 0.53 +0.1
89,673 + GFF3258 0.73 +0.7

Or see this region's nucleotide sequence