Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2515 and GFF2516 are separated by 66 nucleotides GFF2516 and GFF2517 are separated by 72 nucleotides GFF2517 and GFF2518 are separated by 131 nucleotides
GFF2515 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 176,310 to 177,752
GFF2515
GFF2516 - Dihydroanticapsin 7-dehydrogenase, at 177,819 to 178,595
GFF2516
GFF2517 - HTH-type transcriptional regulator McbR, at 178,668 to 179,423
GFF2517
GFF2518 - hypothetical protein, at 179,555 to 180,835
GFF2518
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1 at 177.715 kb on - strand at 177.751 kb on - strand at 177.751 kb on - strand at 177.820 kb on + strand at 178.069 kb on - strand, within GFF2516 at 178.602 kb on - strand at 178.624 kb on + strand at 178.698 kb on + strand at 178.718 kb on + strand at 178.915 kb on + strand, within GFF2517 at 178.916 kb on - strand, within GFF2517 at 178.916 kb on - strand, within GFF2517 at 179.299 kb on + strand, within GFF2517 at 179.437 kb on + strand at 179.873 kb on + strand, within GFF2518 at 179.874 kb on - strand, within GFF2518 at 179.874 kb on - strand, within GFF2518 at 179.875 kb on + strand, within GFF2518 at 179.967 kb on + strand, within GFF2518 at 180.024 kb on - strand, within GFF2518 at 180.024 kb on - strand, within GFF2518 at 180.024 kb on - strand, within GFF2518 at 180.024 kb on - strand, within GFF2518 at 180.056 kb on + strand, within GFF2518 at 180.056 kb on + strand, within GFF2518 at 180.056 kb on + strand, within GFF2518 at 180.057 kb on - strand, within GFF2518 at 180.057 kb on - strand, within GFF2518 at 180.173 kb on + strand, within GFF2518 at 180.173 kb on + strand, within GFF2518 at 180.174 kb on - strand, within GFF2518 at 180.174 kb on - strand, within GFF2518 at 180.377 kb on - strand, within GFF2518
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 177,715 - -0.6 177,751 - +0.3 177,751 - -0.2 177,820 + +0.7 178,069 - GFF2516 0.32 -1.0 178,602 - -0.7 178,624 + -0.4 178,698 + -0.8 178,718 + +0.0 178,915 + GFF2517 0.33 -2.0 178,916 - GFF2517 0.33 -0.0 178,916 - GFF2517 0.33 -1.5 179,299 + GFF2517 0.83 -0.3 179,437 + -1.4 179,873 + GFF2518 0.25 -0.1 179,874 - GFF2518 0.25 -0.5 179,874 - GFF2518 0.25 -0.2 179,875 + GFF2518 0.25 -0.3 179,967 + GFF2518 0.32 -1.1 180,024 - GFF2518 0.37 +0.1 180,024 - GFF2518 0.37 +0.2 180,024 - GFF2518 0.37 -0.7 180,024 - GFF2518 0.37 +0.2 180,056 + GFF2518 0.39 +0.0 180,056 + GFF2518 0.39 +0.0 180,056 + GFF2518 0.39 +0.1 180,057 - GFF2518 0.39 -1.1 180,057 - GFF2518 0.39 -0.0 180,173 + GFF2518 0.48 -0.9 180,173 + GFF2518 0.48 -0.4 180,174 - GFF2518 0.48 -0.5 180,174 - GFF2518 0.48 +0.1 180,377 - GFF2518 0.64 -1.3
Or see this region's nucleotide sequence