Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2509 and GFF2510 are separated by 355 nucleotides GFF2510 and GFF2511 are separated by 251 nucleotides GFF2511 and GFF2512 are separated by 18 nucleotides
GFF2509 - RNA polymerase sigma factor RpoH, at 170,674 to 171,570
GFF2509
GFF2510 - Regulator of RpoS, at 171,926 to 172,678
GFF2510
GFF2511 - hypothetical protein, at 172,930 to 173,556
GFF2511
GFF2512 - hypothetical protein, at 173,575 to 174,597
GFF2512
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 171.614 kb on + strand at 171.615 kb on - strand at 171.615 kb on - strand at 171.615 kb on - strand at 171.648 kb on - strand at 171.648 kb on - strand at 171.666 kb on + strand at 171.666 kb on + strand at 171.741 kb on - strand at 171.741 kb on - strand at 171.741 kb on - strand at 171.741 kb on - strand at 171.745 kb on - strand at 171.815 kb on + strand at 171.816 kb on - strand at 171.823 kb on + strand at 171.832 kb on - strand at 172.071 kb on + strand, within GFF2510 at 172.071 kb on + strand, within GFF2510 at 172.072 kb on - strand, within GFF2510 at 172.072 kb on - strand, within GFF2510 at 172.072 kb on - strand, within GFF2510 at 172.072 kb on - strand, within GFF2510 at 172.594 kb on - strand, within GFF2510 at 172.594 kb on - strand, within GFF2510 at 172.789 kb on + strand at 172.789 kb on + strand at 172.844 kb on + strand at 172.844 kb on + strand at 172.845 kb on - strand at 173.008 kb on + strand, within GFF2511 at 173.008 kb on + strand, within GFF2511 at 173.008 kb on + strand, within GFF2511 at 173.008 kb on + strand, within GFF2511 at 173.008 kb on + strand, within GFF2511 at 173.008 kb on + strand, within GFF2511 at 173.009 kb on - strand, within GFF2511 at 173.009 kb on - strand, within GFF2511 at 173.009 kb on - strand, within GFF2511 at 173.009 kb on - strand, within GFF2511 at 173.009 kb on - strand, within GFF2511 at 173.044 kb on - strand, within GFF2511 at 173.088 kb on + strand, within GFF2511 at 173.088 kb on + strand, within GFF2511 at 173.088 kb on + strand, within GFF2511 at 173.089 kb on - strand, within GFF2511 at 173.089 kb on - strand, within GFF2511 at 173.089 kb on - strand, within GFF2511 at 173.089 kb on - strand, within GFF2511 at 173.410 kb on + strand, within GFF2511 at 173.410 kb on + strand, within GFF2511 at 173.411 kb on - strand, within GFF2511 at 173.411 kb on - strand, within GFF2511 at 173.411 kb on - strand, within GFF2511 at 173.507 kb on - strand at 173.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 171,614 + -0.4 171,615 - -0.0 171,615 - -0.0 171,615 - -0.7 171,648 - -0.2 171,648 - -0.0 171,666 + -1.0 171,666 + +0.5 171,741 - +1.5 171,741 - -0.9 171,741 - -0.0 171,741 - -0.2 171,745 - +0.1 171,815 + +0.4 171,816 - -0.6 171,823 + -0.8 171,832 - -1.4 172,071 + GFF2510 0.19 -0.2 172,071 + GFF2510 0.19 -0.3 172,072 - GFF2510 0.19 -0.1 172,072 - GFF2510 0.19 -0.2 172,072 - GFF2510 0.19 -0.2 172,072 - GFF2510 0.19 -0.8 172,594 - GFF2510 0.89 -0.5 172,594 - GFF2510 0.89 -1.9 172,789 + +0.3 172,789 + -0.5 172,844 + -0.5 172,844 + -1.7 172,845 - +0.2 173,008 + GFF2511 0.12 -0.3 173,008 + GFF2511 0.12 +0.1 173,008 + GFF2511 0.12 -0.4 173,008 + GFF2511 0.12 +0.2 173,008 + GFF2511 0.12 +0.1 173,008 + GFF2511 0.12 -0.9 173,009 - GFF2511 0.13 -0.1 173,009 - GFF2511 0.13 -0.3 173,009 - GFF2511 0.13 -0.5 173,009 - GFF2511 0.13 +0.6 173,009 - GFF2511 0.13 -0.1 173,044 - GFF2511 0.18 -1.0 173,088 + GFF2511 0.25 -0.1 173,088 + GFF2511 0.25 -0.0 173,088 + GFF2511 0.25 +0.9 173,089 - GFF2511 0.25 +1.3 173,089 - GFF2511 0.25 -1.2 173,089 - GFF2511 0.25 +1.1 173,089 - GFF2511 0.25 +0.6 173,410 + GFF2511 0.77 -0.6 173,410 + GFF2511 0.77 +0.2 173,411 - GFF2511 0.77 +1.5 173,411 - GFF2511 0.77 +0.2 173,411 - GFF2511 0.77 +0.3 173,507 - +1.4 173,576 + +0.1
Or see this region's nucleotide sequence