Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1868 and GFF1869 overlap by 16 nucleotides GFF1869 and GFF1870 are separated by 167 nucleotides GFF1870 and GFF1871 are separated by 108 nucleotides GFF1871 and GFF1872 are separated by 149 nucleotides
GFF1868 - Alanine racemase, biosynthetic, at 529,836 to 530,837
GFF1868
GFF1869 - hypothetical protein, at 530,822 to 530,989
GFF1869
GFF1870 - DNA repair protein RadA, at 531,157 to 532,647
GFF1870
GFF1871 - hypothetical protein, at 532,756 to 533,331
GFF1871
GFF1872 - Amidophosphoribosyltransferase, at 533,481 to 535,019
GFF1872
Position (kb) 531
532
533 Strain fitness (log2 ratio) -1
0
1 at 530.892 kb on + strand, within GFF1869 at 530.893 kb on - strand, within GFF1869 at 531.038 kb on + strand at 531.038 kb on + strand at 531.039 kb on - strand at 531.062 kb on + strand at 531.062 kb on + strand at 531.065 kb on - strand at 531.080 kb on + strand at 531.081 kb on - strand at 531.083 kb on - strand at 531.085 kb on - strand at 531.206 kb on - strand at 531.520 kb on + strand, within GFF1870 at 531.520 kb on + strand, within GFF1870 at 531.520 kb on + strand, within GFF1870 at 532.669 kb on + strand at 532.763 kb on + strand at 533.329 kb on + strand at 533.329 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 530,892 + GFF1869 0.42 -0.2 530,893 - GFF1869 0.42 -1.0 531,038 + +0.7 531,038 + +0.5 531,039 - +0.9 531,062 + -0.0 531,062 + -0.2 531,065 - -0.5 531,080 + -0.1 531,081 - -0.1 531,083 - +0.2 531,085 - +0.1 531,206 - -0.6 531,520 + GFF1870 0.24 -1.1 531,520 + GFF1870 0.24 -0.0 531,520 + GFF1870 0.24 -0.5 532,669 + -0.4 532,763 + +0.5 533,329 + +0.0 533,329 + -0.1
Or see this region's nucleotide sequence