Strain Fitness in Xanthobacter sp. DMC5 around GFF3884

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3882 and GFF3883 are separated by 2 nucleotidesGFF3883 and GFF3884 are separated by 29 nucleotidesGFF3884 and GFF3885 are separated by 153 nucleotides GFF3882 - Tryptophan synthase beta chain, at 249,335 to 250,552 GFF3882 GFF3883 - hypothetical protein, at 250,555 to 250,896 GFF3883 GFF3884 - Tryptophan synthase alpha chain, at 250,926 to 251,753 GFF3884 GFF3885 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 251,907 to 252,800 GFF3885 Position (kb) 250 251 252Strain fitness (log2 ratio) -1 0 1at 250.527 kb on + strandat 250.666 kb on + strand, within GFF3883at 250.894 kb on + strandat 250.894 kb on + strandat 251.857 kb on + strandat 251.857 kb on + strandat 251.857 kb on + strandat 251.857 kb on + strandat 251.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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250,527 + -0.1
250,666 + GFF3883 0.32 -0.3
250,894 + -0.4
250,894 + +0.5
251,857 + -0.0
251,857 + -1.0
251,857 + -0.8
251,857 + +0.3
251,857 + -0.4

Or see this region's nucleotide sequence