Strain Fitness in Xanthobacter sp. DMC5 around GFF2446

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2445 and GFF2446 are separated by 88 nucleotidesGFF2446 and GFF2447 are separated by 74 nucleotidesGFF2447 and GFF2448 are separated by 11 nucleotides GFF2445 - Fructose-1,6-bisphosphatase class 1, at 102,731 to 103,825 GFF2445 GFF2446 - Protein CbbX, at 103,914 to 104,867 GFF2446 GFF2447 - Ribulose bisphosphate carboxylase small chain, at 104,942 to 105,343 GFF2447 GFF2448 - Ribulose bisphosphate carboxylase large chain, at 105,355 to 106,821 GFF2448 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1at 102.951 kb on + strand, within GFF2445at 102.951 kb on + strand, within GFF2445at 102.952 kb on - strand, within GFF2445at 102.978 kb on + strand, within GFF2445at 102.978 kb on + strand, within GFF2445at 102.979 kb on - strand, within GFF2445at 102.979 kb on - strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.123 kb on - strand, within GFF2445at 103.152 kb on + strand, within GFF2445at 103.153 kb on - strand, within GFF2445at 103.153 kb on - strand, within GFF2445at 103.305 kb on + strand, within GFF2445at 103.306 kb on - strand, within GFF2445at 103.561 kb on - strand, within GFF2445at 103.916 kb on - strandat 103.934 kb on - strandat 103.934 kb on - strandat 103.934 kb on - strandat 104.131 kb on + strand, within GFF2446at 104.132 kb on - strand, within GFF2446at 104.132 kb on - strand, within GFF2446at 104.132 kb on - strand, within GFF2446at 104.170 kb on + strand, within GFF2446at 104.170 kb on + strand, within GFF2446at 104.170 kb on + strand, within GFF2446at 104.170 kb on + strand, within GFF2446at 104.171 kb on - strand, within GFF2446at 104.171 kb on - strand, within GFF2446at 104.171 kb on - strand, within GFF2446at 104.171 kb on - strand, within GFF2446at 104.224 kb on + strand, within GFF2446at 104.224 kb on + strand, within GFF2446at 104.305 kb on + strand, within GFF2446at 104.306 kb on - strand, within GFF2446at 104.413 kb on + strand, within GFF2446at 104.414 kb on - strand, within GFF2446at 104.416 kb on + strand, within GFF2446at 104.456 kb on + strand, within GFF2446at 104.492 kb on + strand, within GFF2446at 104.493 kb on - strand, within GFF2446at 104.493 kb on - strand, within GFF2446at 104.494 kb on + strand, within GFF2446at 104.494 kb on + strand, within GFF2446at 104.495 kb on - strand, within GFF2446at 104.495 kb on - strand, within GFF2446at 104.548 kb on + strand, within GFF2446at 104.548 kb on + strand, within GFF2446at 104.549 kb on - strand, within GFF2446at 104.549 kb on - strand, within GFF2446at 104.549 kb on - strand, within GFF2446at 104.885 kb on + strandat 104.956 kb on - strandat 104.956 kb on - strandat 104.956 kb on - strandat 104.956 kb on - strandat 104.976 kb on + strandat 105.108 kb on + strand, within GFF2447at 105.109 kb on - strand, within GFF2447at 105.150 kb on + strand, within GFF2447at 105.151 kb on - strand, within GFF2447at 105.151 kb on - strand, within GFF2447at 105.204 kb on + strand, within GFF2447at 105.204 kb on + strand, within GFF2447at 105.204 kb on + strand, within GFF2447at 105.205 kb on - strand, within GFF2447at 105.235 kb on - strand, within GFF2447at 105.270 kb on + strand, within GFF2447at 105.271 kb on - strand, within GFF2447at 105.271 kb on - strand, within GFF2447at 105.404 kb on + strandat 105.404 kb on + strandat 105.404 kb on + strandat 105.737 kb on + strand, within GFF2448at 105.738 kb on - strand, within GFF2448at 105.773 kb on + strand, within GFF2448at 105.773 kb on + strand, within GFF2448at 105.773 kb on + strand, within GFF2448at 105.773 kb on + strand, within GFF2448at 105.773 kb on + strand, within GFF2448at 105.773 kb on + strand, within GFF2448at 105.774 kb on - strand, within GFF2448at 105.774 kb on - strand, within GFF2448at 105.774 kb on - strand, within GFF2448at 105.774 kb on - strand, within GFF2448at 105.776 kb on + strand, within GFF2448

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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102,951 + GFF2445 0.20 -0.5
102,951 + GFF2445 0.20 +0.7
102,952 - GFF2445 0.20 +0.1
102,978 + GFF2445 0.23 -0.5
102,978 + GFF2445 0.23 -0.9
102,979 - GFF2445 0.23 +0.7
102,979 - GFF2445 0.23 +0.1
103,008 + GFF2445 0.25 +0.0
103,008 + GFF2445 0.25 -0.3
103,008 + GFF2445 0.25 -0.2
103,008 + GFF2445 0.25 +0.5
103,008 + GFF2445 0.25 -0.9
103,008 + GFF2445 0.25 -0.7
103,009 - GFF2445 0.25 +0.3
103,009 - GFF2445 0.25 -0.0
103,009 - GFF2445 0.25 -0.7
103,009 - GFF2445 0.25 -0.1
103,009 - GFF2445 0.25 -0.9
103,009 - GFF2445 0.25 -2.2
103,009 - GFF2445 0.25 +0.2
103,009 - GFF2445 0.25 -0.2
103,009 - GFF2445 0.25 -1.0
103,009 - GFF2445 0.25 +0.0
103,009 - GFF2445 0.25 -0.2
103,009 - GFF2445 0.25 -0.2
103,122 + GFF2445 0.36 +0.4
103,122 + GFF2445 0.36 -0.8
103,122 + GFF2445 0.36 -1.4
103,123 - GFF2445 0.36 -1.2
103,152 + GFF2445 0.38 -0.6
103,153 - GFF2445 0.39 -0.2
103,153 - GFF2445 0.39 +0.2
103,305 + GFF2445 0.52 -0.1
103,306 - GFF2445 0.53 +0.7
103,561 - GFF2445 0.76 -0.3
103,916 - -0.9
103,934 - +0.3
103,934 - +0.6
103,934 - +0.8
104,131 + GFF2446 0.23 -0.4
104,132 - GFF2446 0.23 -0.6
104,132 - GFF2446 0.23 -2.9
104,132 - GFF2446 0.23 -1.2
104,170 + GFF2446 0.27 -0.5
104,170 + GFF2446 0.27 -0.6
104,170 + GFF2446 0.27 -0.6
104,170 + GFF2446 0.27 -0.7
104,171 - GFF2446 0.27 -1.0
104,171 - GFF2446 0.27 -1.1
104,171 - GFF2446 0.27 -0.4
104,171 - GFF2446 0.27 -1.2
104,224 + GFF2446 0.32 +0.4
104,224 + GFF2446 0.32 -0.9
104,305 + GFF2446 0.41 -0.8
104,306 - GFF2446 0.41 -0.4
104,413 + GFF2446 0.52 -0.3
104,414 - GFF2446 0.52 -1.2
104,416 + GFF2446 0.53 -2.6
104,456 + GFF2446 0.57 +0.8
104,492 + GFF2446 0.61 +0.4
104,493 - GFF2446 0.61 -1.0
104,493 - GFF2446 0.61 -0.2
104,494 + GFF2446 0.61 +0.1
104,494 + GFF2446 0.61 +0.0
104,495 - GFF2446 0.61 -0.7
104,495 - GFF2446 0.61 -0.7
104,548 + GFF2446 0.66 +0.4
104,548 + GFF2446 0.66 -0.9
104,549 - GFF2446 0.67 +0.7
104,549 - GFF2446 0.67 -0.4
104,549 - GFF2446 0.67 -1.9
104,885 + -0.2
104,956 - +0.1
104,956 - -0.0
104,956 - -0.1
104,956 - +0.4
104,976 + +0.0
105,108 + GFF2447 0.41 -0.3
105,109 - GFF2447 0.42 -1.3
105,150 + GFF2447 0.52 -0.6
105,151 - GFF2447 0.52 -1.2
105,151 - GFF2447 0.52 -0.4
105,204 + GFF2447 0.65 -0.0
105,204 + GFF2447 0.65 -0.6
105,204 + GFF2447 0.65 -0.4
105,205 - GFF2447 0.65 -0.6
105,235 - GFF2447 0.73 +0.2
105,270 + GFF2447 0.82 -0.0
105,271 - GFF2447 0.82 -2.6
105,271 - GFF2447 0.82 -0.2
105,404 + -1.1
105,404 + -0.6
105,404 + -1.3
105,737 + GFF2448 0.26 -1.1
105,738 - GFF2448 0.26 -1.4
105,773 + GFF2448 0.28 -0.8
105,773 + GFF2448 0.28 -0.2
105,773 + GFF2448 0.28 -0.2
105,773 + GFF2448 0.28 -1.2
105,773 + GFF2448 0.28 -0.6
105,773 + GFF2448 0.28 -1.2
105,774 - GFF2448 0.29 -1.1
105,774 - GFF2448 0.29 -1.0
105,774 - GFF2448 0.29 -1.4
105,774 - GFF2448 0.29 +0.2
105,776 + GFF2448 0.29 +0.1

Or see this region's nucleotide sequence