Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04285 and MPMX19_04286 are separated by 32 nucleotides MPMX19_04286 and MPMX19_04287 are separated by 93 nucleotides
MPMX19_04285: MPMX19_04285 - Homoserine O-acetyltransferase, at 643,931 to 645,145
_04285
MPMX19_04286: MPMX19_04286 - hypothetical protein, at 645,178 to 645,705
_04286
MPMX19_04287: MPMX19_04287 - Colistin resistance protein EmrB, at 645,799 to 647,352
_04287
Position (kb) 645
646 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.183 kb on - strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.202 kb on - strand, within MPMX19_04285 at 644.202 kb on - strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.378 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.798 kb on + strand, within MPMX19_04285 at 644.798 kb on + strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.870 kb on + strand, within MPMX19_04285 at 644.870 kb on + strand, within MPMX19_04285 at 644.870 kb on + strand, within MPMX19_04285 at 644.870 kb on + strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.143 kb on + strand at 645.143 kb on + strand at 645.143 kb on + strand at 645.143 kb on + strand at 645.144 kb on - strand at 645.144 kb on - strand at 645.144 kb on - strand at 645.179 kb on + strand at 645.179 kb on + strand at 645.179 kb on + strand at 645.179 kb on + strand at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.575 kb on + strand, within MPMX19_04286 at 645.575 kb on + strand, within MPMX19_04286 at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.690 kb on - strand at 645.690 kb on - strand at 645.690 kb on - strand at 645.690 kb on - strand at 645.690 kb on - strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.790 kb on - strand at 645.790 kb on - strand at 645.790 kb on - strand at 645.790 kb on - strand at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.140 kb on - strand, within MPMX19_04287 at 646.140 kb on - strand, within MPMX19_04287 at 646.140 kb on - strand, within MPMX19_04287 at 646.140 kb on - strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.476 kb on - strand, within MPMX19_04287 at 646.476 kb on - strand, within MPMX19_04287 at 646.487 kb on + strand, within MPMX19_04287 at 646.488 kb on - strand, within MPMX19_04287 at 646.514 kb on + strand, within MPMX19_04287 at 646.514 kb on + strand, within MPMX19_04287 at 646.514 kb on + strand, within MPMX19_04287 at 646.514 kb on + strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.578 kb on - strand, within MPMX19_04287 at 646.578 kb on - strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 644,182 + MPMX19_04285 0.21 +0.2 644,182 + MPMX19_04285 0.21 -0.2 644,182 + MPMX19_04285 0.21 +0.5 644,182 + MPMX19_04285 0.21 +1.7 644,183 - MPMX19_04285 0.21 -0.4 644,201 + MPMX19_04285 0.22 +0.2 644,201 + MPMX19_04285 0.22 +0.8 644,201 + MPMX19_04285 0.22 +0.5 644,201 + MPMX19_04285 0.22 +0.3 644,202 - MPMX19_04285 0.22 +0.2 644,202 - MPMX19_04285 0.22 -1.4 644,276 + MPMX19_04285 0.28 +0.8 644,276 + MPMX19_04285 0.28 -0.3 644,276 + MPMX19_04285 0.28 +1.5 644,276 + MPMX19_04285 0.28 -0.6 644,276 + MPMX19_04285 0.28 +0.4 644,276 + MPMX19_04285 0.28 -0.8 644,277 - MPMX19_04285 0.28 -0.0 644,277 - MPMX19_04285 0.28 +1.1 644,277 - MPMX19_04285 0.28 +1.4 644,277 - MPMX19_04285 0.28 -1.6 644,378 + MPMX19_04285 0.37 -0.3 644,648 + MPMX19_04285 0.59 -2.1 644,648 + MPMX19_04285 0.59 +0.7 644,648 + MPMX19_04285 0.59 +0.9 644,648 + MPMX19_04285 0.59 +0.6 644,648 + MPMX19_04285 0.59 -2.1 644,648 + MPMX19_04285 0.59 +1.2 644,649 - MPMX19_04285 0.59 -1.8 644,649 - MPMX19_04285 0.59 -1.9 644,649 - MPMX19_04285 0.59 -1.3 644,649 - MPMX19_04285 0.59 -0.2 644,649 - MPMX19_04285 0.59 -0.3 644,649 - MPMX19_04285 0.59 -0.3 644,649 - MPMX19_04285 0.59 +0.5 644,651 + MPMX19_04285 0.59 +0.6 644,651 + MPMX19_04285 0.59 -0.6 644,651 + MPMX19_04285 0.59 -0.4 644,652 - MPMX19_04285 0.59 -0.2 644,652 - MPMX19_04285 0.59 -0.6 644,652 - MPMX19_04285 0.59 -1.6 644,652 - MPMX19_04285 0.59 -1.5 644,798 + MPMX19_04285 0.71 +0.9 644,798 + MPMX19_04285 0.71 -0.5 644,799 - MPMX19_04285 0.71 -0.4 644,799 - MPMX19_04285 0.71 -0.4 644,799 - MPMX19_04285 0.71 +0.1 644,799 - MPMX19_04285 0.71 -0.6 644,799 - MPMX19_04285 0.71 +0.8 644,870 + MPMX19_04285 0.77 +0.0 644,870 + MPMX19_04285 0.77 +0.4 644,870 + MPMX19_04285 0.77 +1.0 644,870 + MPMX19_04285 0.77 +2.0 644,871 - MPMX19_04285 0.77 +0.6 644,871 - MPMX19_04285 0.77 -0.2 644,871 - MPMX19_04285 0.77 +0.9 644,871 - MPMX19_04285 0.77 +0.4 644,871 - MPMX19_04285 0.77 +0.5 645,050 + -0.6 645,050 + -2.0 645,050 + +0.2 645,050 + +1.7 645,050 + -0.9 645,050 + -1.2 645,051 - +0.1 645,051 - -1.4 645,051 - +1.1 645,051 - -1.5 645,051 - +0.7 645,051 - +0.9 645,051 - -0.2 645,051 - +0.2 645,143 + -1.0 645,143 + +1.2 645,143 + -0.9 645,143 + -0.4 645,144 - -0.8 645,144 - -2.6 645,144 - -1.1 645,179 + -0.2 645,179 + -0.4 645,179 + -0.6 645,179 + +0.3 645,302 + MPMX19_04286 0.23 +0.4 645,302 + MPMX19_04286 0.23 +1.0 645,302 + MPMX19_04286 0.23 +0.3 645,302 + MPMX19_04286 0.23 +0.5 645,302 + MPMX19_04286 0.23 +0.1 645,302 + MPMX19_04286 0.23 +0.5 645,302 + MPMX19_04286 0.23 -0.2 645,302 + MPMX19_04286 0.23 +0.3 645,302 + MPMX19_04286 0.23 -0.6 645,302 + MPMX19_04286 0.23 +0.2 645,302 + MPMX19_04286 0.23 -0.2 645,303 - MPMX19_04286 0.24 +1.1 645,303 - MPMX19_04286 0.24 -0.4 645,303 - MPMX19_04286 0.24 +0.4 645,303 - MPMX19_04286 0.24 -1.6 645,303 - MPMX19_04286 0.24 +1.8 645,303 - MPMX19_04286 0.24 -1.2 645,303 - MPMX19_04286 0.24 +1.1 645,303 - MPMX19_04286 0.24 +0.2 645,303 - MPMX19_04286 0.24 -0.2 645,303 - MPMX19_04286 0.24 -1.6 645,575 + MPMX19_04286 0.75 +0.0 645,575 + MPMX19_04286 0.75 -0.8 645,689 + +0.1 645,689 + -0.6 645,689 + -0.9 645,689 + -1.2 645,689 + +0.4 645,689 + -2.6 645,689 + +0.6 645,689 + +0.5 645,690 - -0.1 645,690 - -0.7 645,690 - -0.3 645,690 - +1.2 645,690 - -0.6 645,763 + -0.0 645,763 + +0.0 645,763 + +0.1 645,763 + -0.8 645,763 + -0.2 645,763 + +0.2 645,763 + +1.8 645,763 + -0.4 645,763 + +0.2 645,763 + -0.8 645,763 + -2.7 645,763 + +0.3 645,763 + -2.1 645,764 - -0.3 645,764 - -0.8 645,764 - -1.2 645,764 - +0.6 645,764 - +0.4 645,764 - +0.1 645,764 - -1.2 645,764 - +0.6 645,765 + +3.0 645,765 + +1.7 645,765 + +0.8 645,765 + +0.4 645,765 + -0.4 645,765 + -0.1 645,766 - +1.1 645,766 - -1.5 645,766 - -0.7 645,766 - +0.6 645,766 - +0.3 645,766 - -0.3 645,789 + +0.2 645,789 + -0.4 645,789 + -1.8 645,789 + -0.2 645,789 + -1.3 645,789 + +1.1 645,789 + -1.2 645,789 + +0.9 645,789 + -0.8 645,790 - -0.6 645,790 - -1.2 645,790 - -0.4 645,790 - +0.2 646,139 + MPMX19_04287 0.22 -1.9 646,139 + MPMX19_04287 0.22 -0.4 646,139 + MPMX19_04287 0.22 -0.3 646,139 + MPMX19_04287 0.22 +0.2 646,139 + MPMX19_04287 0.22 -0.4 646,139 + MPMX19_04287 0.22 -1.8 646,140 - MPMX19_04287 0.22 -0.5 646,140 - MPMX19_04287 0.22 -0.6 646,140 - MPMX19_04287 0.22 +0.2 646,140 - MPMX19_04287 0.22 -0.1 646,475 + MPMX19_04287 0.44 -1.3 646,475 + MPMX19_04287 0.44 +0.2 646,475 + MPMX19_04287 0.44 +0.7 646,475 + MPMX19_04287 0.44 -0.4 646,475 + MPMX19_04287 0.44 +0.1 646,475 + MPMX19_04287 0.44 -2.3 646,476 - MPMX19_04287 0.44 -0.4 646,476 - MPMX19_04287 0.44 +0.7 646,487 + MPMX19_04287 0.44 -0.0 646,488 - MPMX19_04287 0.44 +1.1 646,514 + MPMX19_04287 0.46 -0.4 646,514 + MPMX19_04287 0.46 -0.5 646,514 + MPMX19_04287 0.46 +0.6 646,514 + MPMX19_04287 0.46 +0.7 646,515 - MPMX19_04287 0.46 -0.8 646,515 - MPMX19_04287 0.46 -0.6 646,515 - MPMX19_04287 0.46 +0.4 646,515 - MPMX19_04287 0.46 +0.8 646,515 - MPMX19_04287 0.46 +0.8 646,515 - MPMX19_04287 0.46 +0.8 646,578 - MPMX19_04287 0.50 -0.2 646,578 - MPMX19_04287 0.50 -1.3 646,688 + MPMX19_04287 0.57 +0.5 646,688 + MPMX19_04287 0.57 -0.9 646,688 + MPMX19_04287 0.57 +0.4 646,688 + MPMX19_04287 0.57 +1.0 646,688 + MPMX19_04287 0.57 +1.1 646,689 - MPMX19_04287 0.57 -0.7 646,689 - MPMX19_04287 0.57 +0.6 646,689 - MPMX19_04287 0.57 +0.2 646,689 - MPMX19_04287 0.57 -1.4 646,689 - MPMX19_04287 0.57 -0.2 646,689 - MPMX19_04287 0.57 -0.7
Or see this region's nucleotide sequence