Strain Fitness in Xanthobacter sp. DMC5 around GFF3997

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3995 and GFF3996 are separated by 150 nucleotidesGFF3996 and GFF3997 are separated by 71 nucleotidesGFF3997 and GFF3998 are separated by 12 nucleotidesGFF3998 and GFF3999 are separated by 15 nucleotides GFF3995 - hypothetical protein, at 368,691 to 369,695 GFF3995 GFF3996 - putative acetoacetate decarboxylase, at 369,846 to 370,595 GFF3996 GFF3997 - hypothetical protein, at 370,667 to 371,818 GFF3997 GFF3998 - hypothetical protein, at 371,831 to 372,619 GFF3998 GFF3999 - hypothetical protein, at 372,635 to 373,285 GFF3999 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1at 369.787 kb on + strandat 369.787 kb on + strandat 369.788 kb on - strandat 369.788 kb on - strandat 369.877 kb on - strandat 369.939 kb on + strand, within GFF3996at 369.939 kb on + strand, within GFF3996at 369.940 kb on - strand, within GFF3996at 369.954 kb on + strand, within GFF3996at 370.026 kb on + strand, within GFF3996at 370.026 kb on + strand, within GFF3996at 370.069 kb on - strand, within GFF3996at 370.122 kb on + strand, within GFF3996at 370.137 kb on + strand, within GFF3996at 370.138 kb on - strand, within GFF3996at 370.138 kb on - strand, within GFF3996at 370.198 kb on - strand, within GFF3996at 370.198 kb on - strand, within GFF3996at 370.198 kb on - strand, within GFF3996at 370.287 kb on + strand, within GFF3996at 370.404 kb on + strand, within GFF3996at 370.404 kb on + strand, within GFF3996at 370.404 kb on + strand, within GFF3996at 370.405 kb on - strand, within GFF3996at 370.405 kb on - strand, within GFF3996at 370.408 kb on - strand, within GFF3996at 370.408 kb on - strand, within GFF3996at 370.567 kb on - strandat 370.567 kb on - strandat 370.567 kb on - strandat 370.572 kb on + strandat 370.572 kb on + strandat 370.573 kb on - strandat 370.573 kb on - strandat 370.573 kb on - strandat 370.721 kb on + strandat 370.721 kb on + strandat 370.722 kb on - strandat 370.770 kb on - strandat 370.784 kb on + strand, within GFF3997at 370.785 kb on - strand, within GFF3997at 370.785 kb on - strand, within GFF3997at 371.084 kb on + strand, within GFF3997at 371.090 kb on + strand, within GFF3997at 371.090 kb on + strand, within GFF3997at 371.090 kb on + strand, within GFF3997at 371.091 kb on - strand, within GFF3997at 371.091 kb on - strand, within GFF3997at 371.208 kb on - strand, within GFF3997at 371.208 kb on - strand, within GFF3997at 371.307 kb on - strand, within GFF3997at 371.433 kb on + strand, within GFF3997at 371.466 kb on - strand, within GFF3997at 371.531 kb on + strand, within GFF3997at 371.531 kb on + strand, within GFF3997at 371.532 kb on - strand, within GFF3997at 371.532 kb on - strand, within GFF3997at 371.532 kb on - strand, within GFF3997at 371.597 kb on + strand, within GFF3997at 371.598 kb on - strand, within GFF3997at 371.598 kb on - strand, within GFF3997at 371.854 kb on + strandat 371.854 kb on + strandat 371.854 kb on + strandat 371.854 kb on + strandat 371.854 kb on + strandat 371.854 kb on + strandat 371.855 kb on - strandat 371.855 kb on - strandat 371.855 kb on - strandat 371.855 kb on - strandat 371.856 kb on + strandat 371.856 kb on + strandat 371.856 kb on + strandat 371.856 kb on + strandat 371.856 kb on + strandat 371.856 kb on + strandat 371.857 kb on - strandat 371.857 kb on - strandat 372.259 kb on - strand, within GFF3998at 372.408 kb on + strand, within GFF3998at 372.408 kb on + strand, within GFF3998at 372.409 kb on - strand, within GFF3998at 372.732 kb on + strand, within GFF3999at 372.732 kb on + strand, within GFF3999at 372.732 kb on + strand, within GFF3999at 372.733 kb on - strand, within GFF3999at 372.765 kb on + strand, within GFF3999at 372.765 kb on + strand, within GFF3999at 372.765 kb on + strand, within GFF3999at 372.766 kb on - strand, within GFF3999at 372.766 kb on - strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.796 kb on - strand, within GFF3999

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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369,787 + -0.5
369,787 + -0.0
369,788 - -0.5
369,788 - -0.4
369,877 - +0.2
369,939 + GFF3996 0.12 -0.5
369,939 + GFF3996 0.12 -0.0
369,940 - GFF3996 0.13 +0.8
369,954 + GFF3996 0.14 +0.6
370,026 + GFF3996 0.24 -0.6
370,026 + GFF3996 0.24 -0.1
370,069 - GFF3996 0.30 +0.5
370,122 + GFF3996 0.37 +0.3
370,137 + GFF3996 0.39 +0.7
370,138 - GFF3996 0.39 -0.6
370,138 - GFF3996 0.39 +0.5
370,198 - GFF3996 0.47 -0.3
370,198 - GFF3996 0.47 +0.0
370,198 - GFF3996 0.47 -0.4
370,287 + GFF3996 0.59 -0.5
370,404 + GFF3996 0.74 +0.2
370,404 + GFF3996 0.74 -0.1
370,404 + GFF3996 0.74 +0.1
370,405 - GFF3996 0.75 -0.2
370,405 - GFF3996 0.75 -0.4
370,408 - GFF3996 0.75 -2.2
370,408 - GFF3996 0.75 +0.1
370,567 - -0.0
370,567 - -0.3
370,567 - +0.6
370,572 + +0.9
370,572 + -0.3
370,573 - +0.2
370,573 - -0.1
370,573 - +0.9
370,721 + +0.4
370,721 + +0.5
370,722 - -0.1
370,770 - -0.6
370,784 + GFF3997 0.10 +0.1
370,785 - GFF3997 0.10 +1.0
370,785 - GFF3997 0.10 +0.7
371,084 + GFF3997 0.36 +0.3
371,090 + GFF3997 0.37 -0.2
371,090 + GFF3997 0.37 +0.1
371,090 + GFF3997 0.37 -0.5
371,091 - GFF3997 0.37 +1.3
371,091 - GFF3997 0.37 -0.4
371,208 - GFF3997 0.47 +0.5
371,208 - GFF3997 0.47 +0.3
371,307 - GFF3997 0.56 +0.8
371,433 + GFF3997 0.66 -0.2
371,466 - GFF3997 0.69 +0.1
371,531 + GFF3997 0.75 -0.1
371,531 + GFF3997 0.75 -1.1
371,532 - GFF3997 0.75 -0.2
371,532 - GFF3997 0.75 +0.3
371,532 - GFF3997 0.75 -0.2
371,597 + GFF3997 0.81 +1.0
371,598 - GFF3997 0.81 +1.5
371,598 - GFF3997 0.81 -0.4
371,854 + -0.6
371,854 + -0.6
371,854 + -0.1
371,854 + -0.2
371,854 + +0.3
371,854 + +0.1
371,855 - +0.1
371,855 - -0.3
371,855 - -0.9
371,855 - +0.3
371,856 + +0.5
371,856 + -0.6
371,856 + +0.1
371,856 + -0.2
371,856 + +1.1
371,856 + -0.1
371,857 - -0.6
371,857 - -0.9
372,259 - GFF3998 0.54 +0.1
372,408 + GFF3998 0.73 +0.6
372,408 + GFF3998 0.73 -0.5
372,409 - GFF3998 0.73 -0.1
372,732 + GFF3999 0.15 -0.3
372,732 + GFF3999 0.15 +0.7
372,732 + GFF3999 0.15 +0.5
372,733 - GFF3999 0.15 +0.1
372,765 + GFF3999 0.20 +0.0
372,765 + GFF3999 0.20 -0.1
372,765 + GFF3999 0.20 -0.1
372,766 - GFF3999 0.20 +1.0
372,766 - GFF3999 0.20 +0.2
372,795 + GFF3999 0.25 +1.5
372,795 + GFF3999 0.25 +0.3
372,795 + GFF3999 0.25 +0.1
372,795 + GFF3999 0.25 -0.5
372,795 + GFF3999 0.25 -0.2
372,795 + GFF3999 0.25 -0.1
372,796 - GFF3999 0.25 +0.3

Or see this region's nucleotide sequence