Strain Fitness in Xanthobacter sp. DMC5 around GFF3264

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3262 and GFF3263 are separated by 11 nucleotidesGFF3263 and GFF3264 are separated by 5 nucleotidesGFF3264 and GFF3265 are separated by 8 nucleotides GFF3262 - hypothetical protein, at 93,457 to 94,266 GFF3262 GFF3263 - hypothetical protein, at 94,278 to 94,925 GFF3263 GFF3264 - Carbamoyl-phosphate synthase large chain, at 94,931 to 98,473 GFF3264 GFF3265 - Allophanate hydrolase, at 98,482 to 98,937 GFF3265 Position (kb) 94 95 96 97 98 99Strain fitness (log2 ratio) -2 -1 0 1at 94.150 kb on + strand, within GFF3262at 94.150 kb on + strand, within GFF3262at 94.150 kb on + strand, within GFF3262at 94.151 kb on - strand, within GFF3262at 94.151 kb on - strand, within GFF3262at 94.212 kb on - strandat 94.212 kb on - strandat 94.212 kb on - strandat 94.424 kb on + strand, within GFF3263at 94.424 kb on + strand, within GFF3263at 94.434 kb on + strand, within GFF3263at 94.434 kb on + strand, within GFF3263at 94.434 kb on + strand, within GFF3263at 94.435 kb on - strand, within GFF3263at 94.461 kb on + strand, within GFF3263at 94.461 kb on + strand, within GFF3263at 94.462 kb on - strand, within GFF3263at 94.475 kb on + strand, within GFF3263at 94.475 kb on + strand, within GFF3263at 94.476 kb on - strand, within GFF3263at 94.500 kb on + strand, within GFF3263at 94.500 kb on + strand, within GFF3263at 94.500 kb on + strand, within GFF3263at 94.501 kb on - strand, within GFF3263at 94.501 kb on - strand, within GFF3263at 94.501 kb on - strand, within GFF3263at 94.501 kb on - strand, within GFF3263at 94.501 kb on - strand, within GFF3263at 94.644 kb on + strand, within GFF3263at 94.644 kb on + strand, within GFF3263at 94.800 kb on + strand, within GFF3263at 95.007 kb on + strandat 95.007 kb on + strandat 95.008 kb on - strandat 95.008 kb on - strandat 95.108 kb on + strandat 95.108 kb on + strandat 95.108 kb on + strandat 95.109 kb on - strandat 95.109 kb on - strandat 95.109 kb on - strandat 95.109 kb on - strandat 95.384 kb on + strand, within GFF3264at 95.385 kb on - strand, within GFF3264at 95.385 kb on - strand, within GFF3264at 95.385 kb on - strand, within GFF3264at 95.519 kb on + strand, within GFF3264at 95.797 kb on - strand, within GFF3264at 95.797 kb on - strand, within GFF3264at 95.797 kb on - strand, within GFF3264at 95.948 kb on + strand, within GFF3264at 95.948 kb on + strand, within GFF3264at 95.949 kb on - strand, within GFF3264at 95.949 kb on - strand, within GFF3264at 96.004 kb on + strand, within GFF3264at 96.068 kb on + strand, within GFF3264at 96.068 kb on + strand, within GFF3264at 96.069 kb on - strand, within GFF3264at 96.069 kb on - strand, within GFF3264at 96.069 kb on - strand, within GFF3264at 96.069 kb on - strand, within GFF3264at 96.185 kb on + strand, within GFF3264at 96.186 kb on - strand, within GFF3264at 96.186 kb on - strand, within GFF3264at 96.611 kb on + strand, within GFF3264at 96.612 kb on - strand, within GFF3264at 96.822 kb on - strand, within GFF3264at 96.822 kb on - strand, within GFF3264at 96.822 kb on - strand, within GFF3264at 96.887 kb on + strand, within GFF3264at 96.887 kb on + strand, within GFF3264at 96.887 kb on + strand, within GFF3264at 96.887 kb on + strand, within GFF3264at 97.437 kb on - strand, within GFF3264at 97.437 kb on - strand, within GFF3264at 97.437 kb on - strand, within GFF3264at 97.592 kb on + strand, within GFF3264at 97.592 kb on + strand, within GFF3264at 97.709 kb on + strand, within GFF3264at 97.710 kb on - strand, within GFF3264at 97.710 kb on - strand, within GFF3264at 97.736 kb on + strand, within GFF3264at 97.736 kb on + strand, within GFF3264at 97.736 kb on + strand, within GFF3264at 97.737 kb on - strand, within GFF3264at 97.737 kb on - strand, within GFF3264at 97.737 kb on - strand, within GFF3264at 97.796 kb on + strand, within GFF3264at 97.850 kb on + strand, within GFF3264at 97.850 kb on + strand, within GFF3264at 97.851 kb on - strand, within GFF3264at 97.851 kb on - strand, within GFF3264at 97.852 kb on + strand, within GFF3264at 97.852 kb on + strand, within GFF3264at 97.853 kb on - strand, within GFF3264at 97.853 kb on - strand, within GFF3264at 97.853 kb on - strand, within GFF3264at 97.853 kb on - strand, within GFF3264at 97.853 kb on - strand, within GFF3264at 97.862 kb on + strand, within GFF3264at 97.862 kb on + strand, within GFF3264at 97.863 kb on - strand, within GFF3264at 97.863 kb on - strand, within GFF3264at 97.863 kb on - strand, within GFF3264at 98.048 kb on + strand, within GFF3264at 98.048 kb on + strand, within GFF3264at 98.049 kb on - strand, within GFF3264at 98.082 kb on - strand, within GFF3264at 98.090 kb on + strand, within GFF3264at 98.090 kb on + strand, within GFF3264at 98.902 kb on + strandat 98.902 kb on + strandat 98.902 kb on + strandat 98.903 kb on - strandat 98.935 kb on + strandat 98.935 kb on + strandat 98.936 kb on - strandat 99.170 kb on - strandat 99.209 kb on + strandat 99.224 kb on + strandat 99.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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94,150 + GFF3262 0.86 -0.8
94,150 + GFF3262 0.86 +0.1
94,150 + GFF3262 0.86 +0.4
94,151 - GFF3262 0.86 +0.6
94,151 - GFF3262 0.86 +0.1
94,212 - +0.2
94,212 - +1.3
94,212 - +0.1
94,424 + GFF3263 0.23 +0.5
94,424 + GFF3263 0.23 +0.3
94,434 + GFF3263 0.24 +0.3
94,434 + GFF3263 0.24 -0.3
94,434 + GFF3263 0.24 -0.3
94,435 - GFF3263 0.24 +1.2
94,461 + GFF3263 0.28 +0.9
94,461 + GFF3263 0.28 -1.1
94,462 - GFF3263 0.28 -0.1
94,475 + GFF3263 0.30 +0.4
94,475 + GFF3263 0.30 -0.4
94,476 - GFF3263 0.31 +1.0
94,500 + GFF3263 0.34 -1.3
94,500 + GFF3263 0.34 -0.4
94,500 + GFF3263 0.34 -0.2
94,501 - GFF3263 0.34 +0.5
94,501 - GFF3263 0.34 +0.3
94,501 - GFF3263 0.34 -0.2
94,501 - GFF3263 0.34 -0.8
94,501 - GFF3263 0.34 -0.1
94,644 + GFF3263 0.56 -1.2
94,644 + GFF3263 0.56 +0.6
94,800 + GFF3263 0.81 -0.8
95,007 + -0.0
95,007 + +1.3
95,008 - +0.8
95,008 - +0.5
95,108 + -0.3
95,108 + +0.4
95,108 + +1.1
95,109 - -1.5
95,109 - -0.4
95,109 - +0.2
95,109 - +0.5
95,384 + GFF3264 0.13 -0.3
95,385 - GFF3264 0.13 -0.0
95,385 - GFF3264 0.13 +0.8
95,385 - GFF3264 0.13 +0.2
95,519 + GFF3264 0.17 -0.0
95,797 - GFF3264 0.24 -0.2
95,797 - GFF3264 0.24 +0.6
95,797 - GFF3264 0.24 +0.3
95,948 + GFF3264 0.29 +0.6
95,948 + GFF3264 0.29 +0.4
95,949 - GFF3264 0.29 +0.3
95,949 - GFF3264 0.29 -0.1
96,004 + GFF3264 0.30 -0.1
96,068 + GFF3264 0.32 +0.5
96,068 + GFF3264 0.32 +0.2
96,069 - GFF3264 0.32 +1.0
96,069 - GFF3264 0.32 +0.0
96,069 - GFF3264 0.32 -1.3
96,069 - GFF3264 0.32 -0.3
96,185 + GFF3264 0.35 +0.0
96,186 - GFF3264 0.35 -0.1
96,186 - GFF3264 0.35 -0.1
96,611 + GFF3264 0.47 -0.6
96,612 - GFF3264 0.47 -1.4
96,822 - GFF3264 0.53 +0.2
96,822 - GFF3264 0.53 +0.3
96,822 - GFF3264 0.53 -0.9
96,887 + GFF3264 0.55 -0.4
96,887 + GFF3264 0.55 -0.6
96,887 + GFF3264 0.55 +1.0
96,887 + GFF3264 0.55 -0.1
97,437 - GFF3264 0.71 +0.5
97,437 - GFF3264 0.71 +0.1
97,437 - GFF3264 0.71 -0.1
97,592 + GFF3264 0.75 +0.4
97,592 + GFF3264 0.75 +0.3
97,709 + GFF3264 0.78 +0.1
97,710 - GFF3264 0.78 +0.5
97,710 - GFF3264 0.78 -1.3
97,736 + GFF3264 0.79 +0.3
97,736 + GFF3264 0.79 -0.6
97,736 + GFF3264 0.79 +1.5
97,737 - GFF3264 0.79 +0.3
97,737 - GFF3264 0.79 +1.5
97,737 - GFF3264 0.79 -0.8
97,796 + GFF3264 0.81 -0.6
97,850 + GFF3264 0.82 -0.1
97,850 + GFF3264 0.82 +0.1
97,851 - GFF3264 0.82 +0.5
97,851 - GFF3264 0.82 -1.2
97,852 + GFF3264 0.82 -0.9
97,852 + GFF3264 0.82 -0.2
97,853 - GFF3264 0.82 -0.8
97,853 - GFF3264 0.82 +0.9
97,853 - GFF3264 0.82 +0.3
97,853 - GFF3264 0.82 -0.4
97,853 - GFF3264 0.82 -1.4
97,862 + GFF3264 0.83 -0.6
97,862 + GFF3264 0.83 -0.8
97,863 - GFF3264 0.83 +0.8
97,863 - GFF3264 0.83 -1.8
97,863 - GFF3264 0.83 -0.1
98,048 + GFF3264 0.88 -0.3
98,048 + GFF3264 0.88 +0.5
98,049 - GFF3264 0.88 +0.4
98,082 - GFF3264 0.89 -0.5
98,090 + GFF3264 0.89 -0.6
98,090 + GFF3264 0.89 +1.6
98,902 + +0.0
98,902 + +0.4
98,902 + -0.7
98,903 - -0.5
98,935 + +0.4
98,935 + +0.2
98,936 - -0.0
99,170 - +0.1
99,209 + -0.6
99,224 + +1.2
99,224 + +0.8

Or see this region's nucleotide sequence