Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1965 and GFF1966 are separated by 53 nucleotides GFF1966 and GFF1967 are separated by 14 nucleotides GFF1967 and GFF1968 are separated by 11 nucleotides
GFF1965 - Hydroxyquinol 1,2-dioxygenase, at 624,285 to 625,253
GFF1965
GFF1966 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 625,307 to 626,134
GFF1966
GFF1967 - 3-keto-5-aminohexanoate cleavage enzyme, at 626,149 to 627,069
GFF1967
GFF1968 - Mycocerosic acid synthase-like polyketide synthase, at 627,081 to 628,121
GFF1968
Position (kb) 626
627
628 Strain fitness (log2 ratio) -1
0
1 at 625.186 kb on - strand at 625.197 kb on + strand at 625.859 kb on + strand, within GFF1966 at 625.859 kb on + strand, within GFF1966 at 625.956 kb on + strand, within GFF1966 at 625.957 kb on - strand, within GFF1966 at 626.300 kb on + strand, within GFF1967 at 626.331 kb on + strand, within GFF1967 at 626.554 kb on + strand, within GFF1967 at 626.554 kb on + strand, within GFF1967 at 626.554 kb on + strand, within GFF1967 at 626.555 kb on - strand, within GFF1967 at 626.555 kb on - strand, within GFF1967 at 626.776 kb on + strand, within GFF1967 at 626.776 kb on + strand, within GFF1967 at 626.777 kb on - strand, within GFF1967 at 626.777 kb on - strand, within GFF1967 at 626.860 kb on + strand, within GFF1967 at 626.861 kb on - strand, within GFF1967 at 626.861 kb on - strand, within GFF1967 at 627.175 kb on - strand at 627.303 kb on + strand, within GFF1968 at 627.304 kb on - strand, within GFF1968 at 627.304 kb on - strand, within GFF1968 at 627.304 kb on - strand, within GFF1968 at 627.807 kb on + strand, within GFF1968 at 627.808 kb on - strand, within GFF1968 at 627.808 kb on - strand, within GFF1968 at 627.808 kb on - strand, within GFF1968 at 627.808 kb on - strand, within GFF1968 at 627.900 kb on + strand, within GFF1968 at 627.900 kb on + strand, within GFF1968 at 627.901 kb on - strand, within GFF1968 at 627.918 kb on + strand, within GFF1968 at 627.918 kb on + strand, within GFF1968 at 627.918 kb on + strand, within GFF1968 at 627.918 kb on + strand, within GFF1968 at 627.919 kb on - strand, within GFF1968 at 627.919 kb on - strand, within GFF1968 at 627.919 kb on - strand, within GFF1968 at 628.039 kb on - strand at 628.065 kb on + strand at 628.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 625,186 - -0.6 625,197 + +0.5 625,859 + GFF1966 0.67 +1.1 625,859 + GFF1966 0.67 -0.4 625,956 + GFF1966 0.78 -0.2 625,957 - GFF1966 0.79 +0.0 626,300 + GFF1967 0.16 +0.4 626,331 + GFF1967 0.20 -0.6 626,554 + GFF1967 0.44 +0.1 626,554 + GFF1967 0.44 -0.1 626,554 + GFF1967 0.44 +1.2 626,555 - GFF1967 0.44 +0.7 626,555 - GFF1967 0.44 -0.2 626,776 + GFF1967 0.68 +0.5 626,776 + GFF1967 0.68 -0.2 626,777 - GFF1967 0.68 -0.1 626,777 - GFF1967 0.68 +0.2 626,860 + GFF1967 0.77 -0.3 626,861 - GFF1967 0.77 +0.3 626,861 - GFF1967 0.77 +0.2 627,175 - -1.1 627,303 + GFF1968 0.21 -0.2 627,304 - GFF1968 0.21 +0.7 627,304 - GFF1968 0.21 -0.6 627,304 - GFF1968 0.21 -0.1 627,807 + GFF1968 0.70 -0.4 627,808 - GFF1968 0.70 -0.1 627,808 - GFF1968 0.70 -0.2 627,808 - GFF1968 0.70 -0.0 627,808 - GFF1968 0.70 +1.2 627,900 + GFF1968 0.79 +0.1 627,900 + GFF1968 0.79 -0.6 627,901 - GFF1968 0.79 -0.3 627,918 + GFF1968 0.80 -0.0 627,918 + GFF1968 0.80 +0.6 627,918 + GFF1968 0.80 +0.4 627,918 + GFF1968 0.80 +1.0 627,919 - GFF1968 0.80 -0.5 627,919 - GFF1968 0.80 -0.5 627,919 - GFF1968 0.80 -0.6 628,039 - -0.5 628,065 + -0.0 628,066 - +0.3
Or see this region's nucleotide sequence