Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1756 and GFF1757 are separated by 99 nucleotides GFF1757 and GFF1758 are separated by 420 nucleotides GFF1758 and GFF1759 are separated by 122 nucleotides
GFF1756 - Catalase, at 405,097 to 406,602
GFF1756
GFF1757 - Aquaporin Z, at 406,702 to 407,391
GFF1757
GFF1758 - hypothetical protein, at 407,812 to 408,093
GFF1758
GFF1759 - hypothetical protein, at 408,216 to 410,783
GFF1759
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1 at 405.910 kb on + strand, within GFF1756 at 405.911 kb on - strand, within GFF1756 at 405.911 kb on - strand, within GFF1756 at 405.911 kb on - strand, within GFF1756 at 405.911 kb on - strand, within GFF1756 at 405.953 kb on - strand, within GFF1756 at 406.003 kb on + strand, within GFF1756 at 406.139 kb on - strand, within GFF1756 at 406.184 kb on - strand, within GFF1756 at 406.184 kb on - strand, within GFF1756 at 406.231 kb on - strand, within GFF1756 at 406.231 kb on - strand, within GFF1756 at 406.244 kb on - strand, within GFF1756 at 406.286 kb on - strand, within GFF1756 at 406.327 kb on + strand, within GFF1756 at 406.328 kb on - strand, within GFF1756 at 406.328 kb on - strand, within GFF1756 at 406.328 kb on - strand, within GFF1756 at 406.328 kb on - strand, within GFF1756 at 406.435 kb on + strand, within GFF1756 at 406.435 kb on + strand, within GFF1756 at 406.435 kb on + strand, within GFF1756 at 406.436 kb on - strand, within GFF1756 at 406.499 kb on - strand at 406.499 kb on - strand at 406.957 kb on + strand, within GFF1757 at 406.958 kb on - strand, within GFF1757 at 407.020 kb on - strand, within GFF1757 at 407.020 kb on - strand, within GFF1757 at 407.021 kb on + strand, within GFF1757 at 407.021 kb on + strand, within GFF1757 at 407.022 kb on - strand, within GFF1757 at 407.022 kb on - strand, within GFF1757 at 407.022 kb on - strand, within GFF1757 at 407.022 kb on - strand, within GFF1757 at 407.244 kb on - strand, within GFF1757 at 407.381 kb on + strand at 407.382 kb on - strand at 407.385 kb on + strand at 407.385 kb on + strand at 407.386 kb on - strand at 407.669 kb on + strand at 407.707 kb on + strand at 407.766 kb on - strand at 407.766 kb on - strand at 407.852 kb on - strand, within GFF1758 at 407.959 kb on + strand, within GFF1758 at 407.959 kb on + strand, within GFF1758 at 407.960 kb on - strand, within GFF1758 at 407.974 kb on + strand, within GFF1758 at 407.975 kb on - strand, within GFF1758 at 408.175 kb on + strand at 408.175 kb on + strand at 408.175 kb on + strand at 408.176 kb on - strand at 408.176 kb on - strand at 408.176 kb on - strand at 408.372 kb on + strand at 408.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 405,910 + GFF1756 0.54 +0.3 405,911 - GFF1756 0.54 -1.2 405,911 - GFF1756 0.54 -0.2 405,911 - GFF1756 0.54 -0.7 405,911 - GFF1756 0.54 -0.4 405,953 - GFF1756 0.57 +0.3 406,003 + GFF1756 0.60 -0.6 406,139 - GFF1756 0.69 -0.3 406,184 - GFF1756 0.72 -0.7 406,184 - GFF1756 0.72 -0.2 406,231 - GFF1756 0.75 +0.1 406,231 - GFF1756 0.75 -0.7 406,244 - GFF1756 0.76 -0.1 406,286 - GFF1756 0.79 -0.2 406,327 + GFF1756 0.82 +0.6 406,328 - GFF1756 0.82 -2.1 406,328 - GFF1756 0.82 +0.0 406,328 - GFF1756 0.82 -0.1 406,328 - GFF1756 0.82 +0.0 406,435 + GFF1756 0.89 -0.5 406,435 + GFF1756 0.89 -0.3 406,435 + GFF1756 0.89 +0.7 406,436 - GFF1756 0.89 +0.6 406,499 - +1.3 406,499 - +0.8 406,957 + GFF1757 0.37 +0.1 406,958 - GFF1757 0.37 +0.2 407,020 - GFF1757 0.46 +0.5 407,020 - GFF1757 0.46 +0.2 407,021 + GFF1757 0.46 -0.0 407,021 + GFF1757 0.46 +1.7 407,022 - GFF1757 0.46 +0.6 407,022 - GFF1757 0.46 -0.4 407,022 - GFF1757 0.46 +0.2 407,022 - GFF1757 0.46 +1.0 407,244 - GFF1757 0.79 +0.3 407,381 + -1.4 407,382 - -1.4 407,385 + -1.0 407,385 + +0.3 407,386 - -0.1 407,669 + -0.2 407,707 + -0.9 407,766 - -0.6 407,766 - -1.8 407,852 - GFF1758 0.14 -0.3 407,959 + GFF1758 0.52 -0.7 407,959 + GFF1758 0.52 +0.4 407,960 - GFF1758 0.52 -0.1 407,974 + GFF1758 0.57 +0.8 407,975 - GFF1758 0.58 -0.6 408,175 + -0.8 408,175 + +0.1 408,175 + -0.5 408,176 - +0.5 408,176 - -0.5 408,176 - -0.0 408,372 + +0.2 408,373 - +0.4
Or see this region's nucleotide sequence