Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35095

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35090 and QEN71_RS35095 are separated by 563 nucleotidesQEN71_RS35095 and QEN71_RS35100 are separated by 191 nucleotidesQEN71_RS35100 and QEN71_RS35105 are separated by 349 nucleotides QEN71_RS35090: QEN71_RS35090 - flagellar filament capping protein FliD, at 1,214,486 to 1,215,913 _RS35090 QEN71_RS35095: QEN71_RS35095 - HU family DNA-binding protein, at 1,216,477 to 1,216,755 _RS35095 QEN71_RS35100: QEN71_RS35100 - response regulator transcription factor, at 1,216,947 to 1,217,324 _RS35100 QEN71_RS35105: QEN71_RS35105 - methyl-accepting chemotaxis protein, at 1,217,674 to 1,219,230 _RS35105 Position (kb) 1216 1217Strain fitness (log2 ratio) -2 -1 0 1 2at 1215.866 kb on + strandat 1215.866 kb on + strandat 1215.867 kb on - strandat 1216.131 kb on + strandat 1216.268 kb on + strandat 1216.269 kb on - strandat 1216.269 kb on - strandat 1216.519 kb on - strand, within QEN71_RS35095at 1216.669 kb on + strand, within QEN71_RS35095at 1216.808 kb on - strandat 1216.808 kb on - strandat 1216.914 kb on - strandat 1216.939 kb on - strandat 1217.483 kb on - strandat 1217.569 kb on + strandat 1217.648 kb on + strandat 1217.709 kb on + strandat 1217.709 kb on + strandat 1217.709 kb on + strandat 1217.710 kb on - strandat 1217.710 kb on - strandat 1217.747 kb on + strandat 1217.747 kb on + strandat 1217.747 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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1,215,866 + -0.8
1,215,866 + -0.2
1,215,867 - -0.2
1,216,131 + +0.3
1,216,268 + -0.4
1,216,269 - -0.3
1,216,269 - -0.2
1,216,519 - QEN71_RS35095 0.15 +0.8
1,216,669 + QEN71_RS35095 0.69 -2.0
1,216,808 - +0.6
1,216,808 - +2.5
1,216,914 - -0.7
1,216,939 - +0.7
1,217,483 - -0.2
1,217,569 + +0.7
1,217,648 + -1.0
1,217,709 + +0.4
1,217,709 + +0.5
1,217,709 + +2.1
1,217,710 - +0.2
1,217,710 - -0.5
1,217,747 + -0.9
1,217,747 + -0.7
1,217,747 + +0.5

Or see this region's nucleotide sequence