Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04424 and MPMX19_04425 are separated by 28 nucleotides MPMX19_04425 and MPMX19_04426 are separated by 223 nucleotides MPMX19_04426 and MPMX19_04427 are separated by 168 nucleotides
MPMX19_04424: MPMX19_04424 - Phyllosphere-induced regulator PhyR, at 789,346 to 790,149
_04424
MPMX19_04425: MPMX19_04425 - Formyltetrahydrofolate deformylase, at 790,178 to 791,044
_04425
MPMX19_04426: MPMX19_04426 - hypothetical protein, at 791,268 to 791,654
_04426
MPMX19_04427: MPMX19_04427 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 791,823 to 792,653
_04427
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 789.273 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.385 kb on + strand at 789.386 kb on - strand at 789.463 kb on + strand, within MPMX19_04424 at 789.463 kb on + strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.523 kb on + strand, within MPMX19_04424 at 789.523 kb on + strand, within MPMX19_04424 at 789.524 kb on - strand, within MPMX19_04424 at 789.524 kb on - strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.581 kb on - strand, within MPMX19_04424 at 789.581 kb on - strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.797 kb on - strand, within MPMX19_04424 at 790.179 kb on + strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.298 kb on + strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.299 kb on - strand at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.499 kb on + strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.500 kb on - strand, within MPMX19_04426 at 791.501 kb on + strand, within MPMX19_04426 at 791.501 kb on + strand, within MPMX19_04426 at 791.502 kb on - strand, within MPMX19_04426 at 791.583 kb on + strand, within MPMX19_04426 at 791.583 kb on + strand, within MPMX19_04426 at 791.583 kb on + strand, within MPMX19_04426 at 791.583 kb on + strand, within MPMX19_04426 at 791.584 kb on - strand, within MPMX19_04426 at 791.584 kb on - strand, within MPMX19_04426 at 791.584 kb on - strand, within MPMX19_04426 at 791.584 kb on - strand, within MPMX19_04426 at 791.584 kb on - strand, within MPMX19_04426 at 791.584 kb on - strand, within MPMX19_04426 at 791.604 kb on + strand, within MPMX19_04426 at 791.604 kb on + strand, within MPMX19_04426 at 791.604 kb on + strand, within MPMX19_04426 at 791.604 kb on + strand, within MPMX19_04426 at 791.604 kb on + strand, within MPMX19_04426 at 791.604 kb on + strand, within MPMX19_04426 at 791.604 kb on + strand, within MPMX19_04426 at 791.604 kb on + strand, within MPMX19_04426 at 791.605 kb on - strand, within MPMX19_04426 at 791.605 kb on - strand, within MPMX19_04426 at 791.605 kb on - strand, within MPMX19_04426 at 791.605 kb on - strand, within MPMX19_04426 at 791.652 kb on + strand at 791.653 kb on - strand at 791.665 kb on + strand at 791.694 kb on + strand at 791.694 kb on + strand at 791.694 kb on + strand at 791.694 kb on + strand at 791.694 kb on + strand at 791.695 kb on - strand at 791.695 kb on - strand at 791.695 kb on - strand at 791.695 kb on - strand at 791.695 kb on - strand at 791.695 kb on - strand at 791.695 kb on - strand at 791.752 kb on + strand at 791.752 kb on + strand at 791.753 kb on - strand at 791.753 kb on - strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.783 kb on + strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.853 kb on + strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.854 kb on - strand at 791.982 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.030 kb on + strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.031 kb on - strand, within MPMX19_04427 at 792.032 kb on + strand, within MPMX19_04427 at 792.032 kb on + strand, within MPMX19_04427 at 792.032 kb on + strand, within MPMX19_04427 at 792.032 kb on + strand, within MPMX19_04427 at 792.033 kb on - strand, within MPMX19_04427
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 789,273 + +0.5 789,355 + -1.8 789,355 + -0.3 789,355 + +0.4 789,355 + -1.6 789,355 + +0.5 789,355 + -1.2 789,355 + -0.6 789,355 + -0.8 789,355 + +0.8 789,355 + -0.1 789,355 + -0.2 789,355 + -0.6 789,355 + +2.0 789,355 + -2.5 789,356 - +0.7 789,356 - +0.7 789,356 - -1.1 789,356 - -1.2 789,356 - -1.8 789,385 + -1.2 789,386 - +0.1 789,463 + MPMX19_04424 0.15 +0.8 789,463 + MPMX19_04424 0.15 +0.2 789,464 - MPMX19_04424 0.15 -1.2 789,464 - MPMX19_04424 0.15 -0.4 789,464 - MPMX19_04424 0.15 -1.5 789,523 + MPMX19_04424 0.22 +0.7 789,523 + MPMX19_04424 0.22 -1.5 789,524 - MPMX19_04424 0.22 -1.3 789,524 - MPMX19_04424 0.22 -1.6 789,580 + MPMX19_04424 0.29 +0.8 789,580 + MPMX19_04424 0.29 +1.5 789,580 + MPMX19_04424 0.29 -0.5 789,581 - MPMX19_04424 0.29 +0.7 789,581 - MPMX19_04424 0.29 -1.2 789,634 + MPMX19_04424 0.36 -0.4 789,634 + MPMX19_04424 0.36 -0.2 789,634 + MPMX19_04424 0.36 +0.4 789,634 + MPMX19_04424 0.36 +0.3 789,634 + MPMX19_04424 0.36 -0.4 789,635 - MPMX19_04424 0.36 -0.6 789,635 - MPMX19_04424 0.36 -1.0 789,635 - MPMX19_04424 0.36 -1.3 789,635 - MPMX19_04424 0.36 -0.5 789,635 - MPMX19_04424 0.36 -0.6 789,635 - MPMX19_04424 0.36 -1.2 789,635 - MPMX19_04424 0.36 +0.5 789,635 - MPMX19_04424 0.36 -0.5 789,786 + MPMX19_04424 0.55 +0.4 789,786 + MPMX19_04424 0.55 -1.6 789,786 + MPMX19_04424 0.55 -0.1 789,786 + MPMX19_04424 0.55 -0.6 789,787 - MPMX19_04424 0.55 +0.2 789,787 - MPMX19_04424 0.55 +0.2 789,787 - MPMX19_04424 0.55 -1.2 789,787 - MPMX19_04424 0.55 -0.1 789,787 - MPMX19_04424 0.55 +0.0 789,787 - MPMX19_04424 0.55 +0.0 789,787 - MPMX19_04424 0.55 -0.6 789,797 - MPMX19_04424 0.56 +0.1 790,179 + -0.1 791,064 - -1.0 791,064 - -0.8 791,064 - +1.1 791,064 - -2.6 791,064 - -0.6 791,064 - -1.1 791,298 + -0.2 791,298 + -2.1 791,298 + +0.0 791,298 + +0.4 791,298 + +0.4 791,298 + -1.3 791,298 + -0.2 791,298 + -1.8 791,298 + +0.6 791,298 + -2.2 791,299 - -2.0 791,299 - -1.0 791,299 - -0.5 791,299 - -2.0 791,299 - -1.2 791,299 - +0.3 791,299 - -1.6 791,299 - -0.8 791,299 - -2.2 791,299 - -1.0 791,299 - +0.3 791,299 - +0.2 791,299 - -1.7 791,499 + MPMX19_04426 0.60 +0.0 791,499 + MPMX19_04426 0.60 -1.0 791,499 + MPMX19_04426 0.60 -0.2 791,499 + MPMX19_04426 0.60 -0.6 791,499 + MPMX19_04426 0.60 -2.0 791,499 + MPMX19_04426 0.60 -2.1 791,499 + MPMX19_04426 0.60 -0.1 791,499 + MPMX19_04426 0.60 -0.4 791,499 + MPMX19_04426 0.60 -0.2 791,499 + MPMX19_04426 0.60 -2.1 791,499 + MPMX19_04426 0.60 -1.2 791,499 + MPMX19_04426 0.60 -1.3 791,499 + MPMX19_04426 0.60 -0.4 791,499 + MPMX19_04426 0.60 -0.9 791,499 + MPMX19_04426 0.60 +0.3 791,499 + MPMX19_04426 0.60 -0.1 791,499 + MPMX19_04426 0.60 +1.6 791,499 + MPMX19_04426 0.60 -1.5 791,500 - MPMX19_04426 0.60 -1.3 791,500 - MPMX19_04426 0.60 +1.4 791,500 - MPMX19_04426 0.60 +0.2 791,500 - MPMX19_04426 0.60 -1.2 791,500 - MPMX19_04426 0.60 +0.6 791,500 - MPMX19_04426 0.60 -1.2 791,500 - MPMX19_04426 0.60 -2.1 791,500 - MPMX19_04426 0.60 +0.4 791,500 - MPMX19_04426 0.60 +0.0 791,500 - MPMX19_04426 0.60 +0.4 791,500 - MPMX19_04426 0.60 -0.3 791,500 - MPMX19_04426 0.60 -0.0 791,500 - MPMX19_04426 0.60 +0.3 791,500 - MPMX19_04426 0.60 -1.5 791,500 - MPMX19_04426 0.60 -0.2 791,500 - MPMX19_04426 0.60 +0.4 791,500 - MPMX19_04426 0.60 -0.6 791,500 - MPMX19_04426 0.60 -0.5 791,501 + MPMX19_04426 0.60 +0.8 791,501 + MPMX19_04426 0.60 -1.0 791,502 - MPMX19_04426 0.60 +0.2 791,583 + MPMX19_04426 0.81 +0.0 791,583 + MPMX19_04426 0.81 -2.1 791,583 + MPMX19_04426 0.81 -0.6 791,583 + MPMX19_04426 0.81 -0.4 791,584 - MPMX19_04426 0.82 +0.4 791,584 - MPMX19_04426 0.82 -0.3 791,584 - MPMX19_04426 0.82 -2.0 791,584 - MPMX19_04426 0.82 -2.1 791,584 - MPMX19_04426 0.82 -1.4 791,584 - MPMX19_04426 0.82 -2.2 791,604 + MPMX19_04426 0.87 -2.3 791,604 + MPMX19_04426 0.87 -0.6 791,604 + MPMX19_04426 0.87 -0.4 791,604 + MPMX19_04426 0.87 +1.6 791,604 + MPMX19_04426 0.87 +1.1 791,604 + MPMX19_04426 0.87 +0.9 791,604 + MPMX19_04426 0.87 -0.4 791,604 + MPMX19_04426 0.87 -1.0 791,605 - MPMX19_04426 0.87 +1.0 791,605 - MPMX19_04426 0.87 +1.2 791,605 - MPMX19_04426 0.87 +1.4 791,605 - MPMX19_04426 0.87 +0.7 791,652 + -1.5 791,653 - -1.0 791,665 + +0.0 791,694 + -0.6 791,694 + -2.9 791,694 + -0.3 791,694 + -0.2 791,694 + +0.8 791,695 - -0.5 791,695 - -2.1 791,695 - -1.2 791,695 - +0.4 791,695 - -1.1 791,695 - -0.0 791,695 - -0.1 791,752 + -0.4 791,752 + +0.2 791,753 - -0.8 791,753 - +0.4 791,783 + -0.6 791,783 + +1.5 791,783 + +1.4 791,783 + +2.5 791,783 + -2.5 791,783 + -0.3 791,783 + -0.6 791,783 + -0.4 791,783 + +1.9 791,783 + -1.5 791,783 + -0.6 791,784 - +0.2 791,784 - +0.8 791,784 - -0.6 791,784 - -0.1 791,784 - -0.6 791,784 - -1.1 791,784 - -0.0 791,784 - -1.1 791,784 - -0.2 791,784 - +0.4 791,784 - -1.0 791,784 - -0.4 791,784 - -0.6 791,784 - -0.3 791,784 - +0.7 791,784 - -0.6 791,853 + -1.6 791,853 + -0.5 791,853 + -1.6 791,853 + +0.0 791,853 + +0.4 791,853 + -1.7 791,853 + +0.4 791,853 + -1.1 791,853 + -0.2 791,853 + -1.5 791,853 + +0.7 791,853 + -0.8 791,853 + -1.6 791,853 + +1.4 791,853 + -1.0 791,853 + +0.5 791,853 + +0.0 791,853 + -2.1 791,853 + +0.8 791,853 + -1.8 791,853 + -1.6 791,853 + -1.2 791,853 + -0.0 791,854 - +1.0 791,854 - -0.4 791,854 - -1.4 791,854 - +0.4 791,854 - -0.6 791,854 - +0.9 791,854 - +0.6 791,854 - -1.2 791,854 - -1.9 791,854 - +2.3 791,854 - +1.1 791,854 - -2.1 791,854 - -0.6 791,854 - +0.7 791,854 - -0.4 791,854 - +0.5 791,854 - -0.2 791,854 - -1.6 791,982 + MPMX19_04427 0.19 -1.5 792,030 + MPMX19_04427 0.25 -0.6 792,030 + MPMX19_04427 0.25 -2.0 792,030 + MPMX19_04427 0.25 +0.5 792,030 + MPMX19_04427 0.25 -0.6 792,030 + MPMX19_04427 0.25 +0.3 792,030 + MPMX19_04427 0.25 -2.0 792,030 + MPMX19_04427 0.25 -0.6 792,030 + MPMX19_04427 0.25 -1.5 792,030 + MPMX19_04427 0.25 -0.3 792,030 + MPMX19_04427 0.25 -0.5 792,030 + MPMX19_04427 0.25 -0.2 792,030 + MPMX19_04427 0.25 +0.2 792,030 + MPMX19_04427 0.25 +0.6 792,030 + MPMX19_04427 0.25 -2.1 792,030 + MPMX19_04427 0.25 -0.1 792,030 + MPMX19_04427 0.25 +1.4 792,030 + MPMX19_04427 0.25 +0.6 792,030 + MPMX19_04427 0.25 -1.2 792,030 + MPMX19_04427 0.25 -1.0 792,030 + MPMX19_04427 0.25 +0.4 792,030 + MPMX19_04427 0.25 -2.1 792,030 + MPMX19_04427 0.25 -0.0 792,031 - MPMX19_04427 0.25 +0.9 792,031 - MPMX19_04427 0.25 +0.2 792,031 - MPMX19_04427 0.25 -1.8 792,031 - MPMX19_04427 0.25 +0.4 792,031 - MPMX19_04427 0.25 +0.3 792,031 - MPMX19_04427 0.25 -0.7 792,031 - MPMX19_04427 0.25 +1.8 792,031 - MPMX19_04427 0.25 +0.5 792,031 - MPMX19_04427 0.25 -0.4 792,031 - MPMX19_04427 0.25 -0.8 792,031 - MPMX19_04427 0.25 +0.2 792,031 - MPMX19_04427 0.25 -0.8 792,031 - MPMX19_04427 0.25 -0.2 792,031 - MPMX19_04427 0.25 +0.2 792,031 - MPMX19_04427 0.25 -0.9 792,032 + MPMX19_04427 0.25 +0.4 792,032 + MPMX19_04427 0.25 -0.2 792,032 + MPMX19_04427 0.25 -0.3 792,032 + MPMX19_04427 0.25 -0.6 792,033 - MPMX19_04427 0.25 +0.8
Or see this region's nucleotide sequence