Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS26225 and QEN71_RS26230 are separated by 171 nucleotides QEN71_RS26230 and QEN71_RS26235 are separated by 6 nucleotides QEN71_RS26235 and QEN71_RS26240 are separated by 501 nucleotides
QEN71_RS26225: QEN71_RS26225 - GspH/FimT family pseudopilin, at 5,845,744 to 5,846,304
_RS26225
QEN71_RS26230: QEN71_RS26230 - transcriptional regulator NrdR, at 5,846,476 to 5,846,967
_RS26230
QEN71_RS26235: QEN71_RS26235 - serine hydroxymethyltransferase, at 5,846,974 to 5,848,221
_RS26235
QEN71_RS26240: QEN71_RS26240 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 5,848,723 to 5,849,469
_RS26240
Position (kb) 5846
5847
5848
5849 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5845.974 kb on - strand, within QEN71_RS26225 at 5846.039 kb on + strand, within QEN71_RS26225 at 5846.039 kb on + strand, within QEN71_RS26225 at 5846.039 kb on + strand, within QEN71_RS26225 at 5846.040 kb on - strand, within QEN71_RS26225 at 5846.040 kb on - strand, within QEN71_RS26225 at 5846.040 kb on - strand, within QEN71_RS26225 at 5846.040 kb on - strand, within QEN71_RS26225 at 5846.110 kb on + strand, within QEN71_RS26225 at 5846.110 kb on + strand, within QEN71_RS26225 at 5846.110 kb on + strand, within QEN71_RS26225 at 5846.110 kb on + strand, within QEN71_RS26225 at 5846.110 kb on + strand, within QEN71_RS26225 at 5846.110 kb on + strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.111 kb on - strand, within QEN71_RS26225 at 5846.129 kb on + strand, within QEN71_RS26225 at 5846.129 kb on + strand, within QEN71_RS26225 at 5846.129 kb on + strand, within QEN71_RS26225 at 5846.129 kb on + strand, within QEN71_RS26225 at 5846.129 kb on + strand, within QEN71_RS26225 at 5846.130 kb on - strand, within QEN71_RS26225 at 5846.130 kb on - strand, within QEN71_RS26225 at 5846.130 kb on - strand, within QEN71_RS26225 at 5846.130 kb on - strand, within QEN71_RS26225 at 5846.130 kb on - strand, within QEN71_RS26225 at 5846.242 kb on + strand, within QEN71_RS26225 at 5846.242 kb on + strand, within QEN71_RS26225 at 5846.242 kb on + strand, within QEN71_RS26225 at 5846.242 kb on + strand, within QEN71_RS26225 at 5846.242 kb on + strand, within QEN71_RS26225 at 5846.243 kb on - strand, within QEN71_RS26225 at 5846.243 kb on - strand, within QEN71_RS26225 at 5846.243 kb on - strand, within QEN71_RS26225 at 5846.243 kb on - strand, within QEN71_RS26225 at 5846.351 kb on + strand at 5846.351 kb on + strand at 5846.351 kb on + strand at 5846.351 kb on + strand at 5846.352 kb on - strand at 5846.367 kb on + strand at 5846.466 kb on - strand at 5846.598 kb on - strand, within QEN71_RS26230 at 5846.598 kb on - strand, within QEN71_RS26230 at 5846.598 kb on - strand, within QEN71_RS26230 at 5846.690 kb on + strand, within QEN71_RS26230 at 5846.691 kb on - strand, within QEN71_RS26230 at 5846.847 kb on - strand, within QEN71_RS26230 at 5846.976 kb on - strand at 5846.982 kb on - strand at 5847.368 kb on + strand, within QEN71_RS26235 at 5847.581 kb on + strand, within QEN71_RS26235 at 5847.609 kb on - strand, within QEN71_RS26235 at 5847.609 kb on - strand, within QEN71_RS26235 at 5847.609 kb on - strand, within QEN71_RS26235 at 5847.632 kb on + strand, within QEN71_RS26235 at 5847.633 kb on - strand, within QEN71_RS26235 at 5847.633 kb on - strand, within QEN71_RS26235 at 5847.755 kb on + strand, within QEN71_RS26235 at 5847.756 kb on - strand, within QEN71_RS26235 at 5847.756 kb on - strand, within QEN71_RS26235 at 5847.785 kb on + strand, within QEN71_RS26235 at 5847.785 kb on + strand, within QEN71_RS26235 at 5847.785 kb on + strand, within QEN71_RS26235 at 5847.786 kb on - strand, within QEN71_RS26235 at 5847.786 kb on - strand, within QEN71_RS26235 at 5848.011 kb on - strand, within QEN71_RS26235 at 5848.025 kb on + strand, within QEN71_RS26235 at 5848.026 kb on - strand, within QEN71_RS26235 at 5848.029 kb on - strand, within QEN71_RS26235 at 5848.055 kb on + strand, within QEN71_RS26235 at 5848.055 kb on + strand, within QEN71_RS26235 at 5848.106 kb on + strand at 5848.106 kb on + strand at 5848.107 kb on - strand at 5848.107 kb on - strand at 5848.233 kb on + strand at 5848.234 kb on - strand at 5848.234 kb on - strand at 5848.283 kb on + strand at 5848.283 kb on + strand at 5848.283 kb on + strand at 5848.283 kb on + strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.284 kb on - strand at 5848.286 kb on + strand at 5848.286 kb on + strand at 5848.286 kb on + strand at 5848.286 kb on + strand at 5848.286 kb on + strand at 5848.286 kb on + strand at 5848.286 kb on + strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.287 kb on - strand at 5848.290 kb on + strand at 5848.290 kb on + strand at 5848.290 kb on + strand at 5848.291 kb on - strand at 5848.291 kb on - strand at 5848.291 kb on - strand at 5848.291 kb on - strand at 5848.291 kb on - strand at 5848.291 kb on - strand at 5848.291 kb on - strand at 5848.338 kb on + strand at 5848.338 kb on + strand at 5848.338 kb on + strand at 5848.338 kb on + strand at 5848.339 kb on - strand at 5848.339 kb on - strand at 5848.339 kb on - strand at 5848.498 kb on + strand at 5848.498 kb on + strand at 5848.498 kb on + strand at 5848.498 kb on + strand at 5848.499 kb on - strand at 5848.499 kb on - strand at 5848.499 kb on - strand at 5848.528 kb on - strand at 5848.528 kb on - strand at 5848.532 kb on + strand at 5848.532 kb on + strand at 5848.532 kb on + strand at 5848.532 kb on + strand at 5848.533 kb on - strand at 5848.533 kb on - strand at 5848.580 kb on - strand at 5848.685 kb on + strand at 5848.685 kb on + strand at 5848.685 kb on + strand at 5848.686 kb on - strand at 5848.686 kb on - strand at 5848.686 kb on - strand at 5848.768 kb on - strand at 5849.043 kb on + strand, within QEN71_RS26240 at 5849.043 kb on + strand, within QEN71_RS26240 at 5849.043 kb on + strand, within QEN71_RS26240 at 5849.044 kb on - strand, within QEN71_RS26240 at 5849.044 kb on - strand, within QEN71_RS26240 at 5849.044 kb on - strand, within QEN71_RS26240 at 5849.161 kb on + strand, within QEN71_RS26240 at 5849.161 kb on + strand, within QEN71_RS26240
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 5,845,974 - QEN71_RS26225 0.41 +0.4 5,846,039 + QEN71_RS26225 0.53 +0.2 5,846,039 + QEN71_RS26225 0.53 +0.1 5,846,039 + QEN71_RS26225 0.53 -0.3 5,846,040 - QEN71_RS26225 0.53 -1.2 5,846,040 - QEN71_RS26225 0.53 -0.3 5,846,040 - QEN71_RS26225 0.53 +0.1 5,846,040 - QEN71_RS26225 0.53 +0.9 5,846,110 + QEN71_RS26225 0.65 -1.8 5,846,110 + QEN71_RS26225 0.65 -1.2 5,846,110 + QEN71_RS26225 0.65 -1.2 5,846,110 + QEN71_RS26225 0.65 +0.7 5,846,110 + QEN71_RS26225 0.65 -0.5 5,846,110 + QEN71_RS26225 0.65 -0.5 5,846,111 - QEN71_RS26225 0.65 -0.3 5,846,111 - QEN71_RS26225 0.65 -0.1 5,846,111 - QEN71_RS26225 0.65 +0.5 5,846,111 - QEN71_RS26225 0.65 +0.3 5,846,111 - QEN71_RS26225 0.65 -0.9 5,846,111 - QEN71_RS26225 0.65 -0.3 5,846,111 - QEN71_RS26225 0.65 -2.9 5,846,111 - QEN71_RS26225 0.65 +0.1 5,846,111 - QEN71_RS26225 0.65 +0.1 5,846,129 + QEN71_RS26225 0.69 -0.0 5,846,129 + QEN71_RS26225 0.69 +0.0 5,846,129 + QEN71_RS26225 0.69 +0.5 5,846,129 + QEN71_RS26225 0.69 -2.2 5,846,129 + QEN71_RS26225 0.69 +0.7 5,846,130 - QEN71_RS26225 0.69 +0.1 5,846,130 - QEN71_RS26225 0.69 -0.2 5,846,130 - QEN71_RS26225 0.69 -1.1 5,846,130 - QEN71_RS26225 0.69 -1.1 5,846,130 - QEN71_RS26225 0.69 -0.6 5,846,242 + QEN71_RS26225 0.89 -0.6 5,846,242 + QEN71_RS26225 0.89 -0.3 5,846,242 + QEN71_RS26225 0.89 -0.8 5,846,242 + QEN71_RS26225 0.89 +0.1 5,846,242 + QEN71_RS26225 0.89 +0.1 5,846,243 - QEN71_RS26225 0.89 +0.5 5,846,243 - QEN71_RS26225 0.89 +0.6 5,846,243 - QEN71_RS26225 0.89 +1.2 5,846,243 - QEN71_RS26225 0.89 +0.4 5,846,351 + -1.5 5,846,351 + -1.6 5,846,351 + +0.5 5,846,351 + +1.4 5,846,352 - -0.9 5,846,367 + +0.2 5,846,466 - +0.1 5,846,598 - QEN71_RS26230 0.25 -3.2 5,846,598 - QEN71_RS26230 0.25 -0.4 5,846,598 - QEN71_RS26230 0.25 +0.2 5,846,690 + QEN71_RS26230 0.43 +0.0 5,846,691 - QEN71_RS26230 0.44 -0.8 5,846,847 - QEN71_RS26230 0.75 -1.2 5,846,976 - +0.5 5,846,982 - -0.1 5,847,368 + QEN71_RS26235 0.32 -2.2 5,847,581 + QEN71_RS26235 0.49 -2.4 5,847,609 - QEN71_RS26235 0.51 -1.5 5,847,609 - QEN71_RS26235 0.51 -3.7 5,847,609 - QEN71_RS26235 0.51 -1.8 5,847,632 + QEN71_RS26235 0.53 -1.5 5,847,633 - QEN71_RS26235 0.53 -2.7 5,847,633 - QEN71_RS26235 0.53 -0.5 5,847,755 + QEN71_RS26235 0.63 -2.8 5,847,756 - QEN71_RS26235 0.63 -0.7 5,847,756 - QEN71_RS26235 0.63 -1.1 5,847,785 + QEN71_RS26235 0.65 -2.6 5,847,785 + QEN71_RS26235 0.65 -0.2 5,847,785 + QEN71_RS26235 0.65 -0.5 5,847,786 - QEN71_RS26235 0.65 -1.1 5,847,786 - QEN71_RS26235 0.65 -1.2 5,848,011 - QEN71_RS26235 0.83 -0.7 5,848,025 + QEN71_RS26235 0.84 -2.3 5,848,026 - QEN71_RS26235 0.84 -1.2 5,848,029 - QEN71_RS26235 0.85 -2.3 5,848,055 + QEN71_RS26235 0.87 -0.9 5,848,055 + QEN71_RS26235 0.87 -2.2 5,848,106 + -0.2 5,848,106 + -0.5 5,848,107 - -2.1 5,848,107 - -2.3 5,848,233 + -2.4 5,848,234 - -0.9 5,848,234 - -0.4 5,848,283 + -1.6 5,848,283 + -0.2 5,848,283 + -4.3 5,848,283 + -0.2 5,848,284 - -0.2 5,848,284 - +0.7 5,848,284 - +0.3 5,848,284 - -1.7 5,848,284 - -0.3 5,848,284 - -1.7 5,848,284 - -1.2 5,848,284 - -1.2 5,848,284 - +1.4 5,848,284 - -1.3 5,848,284 - -2.3 5,848,286 + +0.1 5,848,286 + -2.7 5,848,286 + -3.6 5,848,286 + -2.4 5,848,286 + +0.1 5,848,286 + -1.6 5,848,286 + +0.1 5,848,287 - +2.1 5,848,287 - -0.7 5,848,287 - -0.7 5,848,287 - +0.1 5,848,287 - +0.4 5,848,287 - -0.1 5,848,287 - -0.3 5,848,287 - +0.8 5,848,287 - -2.3 5,848,287 - +0.4 5,848,287 - -0.5 5,848,290 + -1.4 5,848,290 + -0.5 5,848,290 + -1.4 5,848,291 - -1.4 5,848,291 - -0.7 5,848,291 - -0.3 5,848,291 - -0.1 5,848,291 - +0.7 5,848,291 - +0.8 5,848,291 - -0.0 5,848,338 + -2.9 5,848,338 + -0.5 5,848,338 + -2.4 5,848,338 + -2.2 5,848,339 - -1.7 5,848,339 - -1.4 5,848,339 - -1.1 5,848,498 + -2.5 5,848,498 + -2.4 5,848,498 + -1.7 5,848,498 + +0.1 5,848,499 - +1.8 5,848,499 - +0.0 5,848,499 - -2.2 5,848,528 - +0.8 5,848,528 - +0.6 5,848,532 + +0.9 5,848,532 + -0.0 5,848,532 + +0.2 5,848,532 + +0.3 5,848,533 - -0.4 5,848,533 - +0.5 5,848,580 - +1.2 5,848,685 + +0.7 5,848,685 + +0.2 5,848,685 + -1.3 5,848,686 - -0.5 5,848,686 - +0.2 5,848,686 - -0.8 5,848,768 - -0.9 5,849,043 + QEN71_RS26240 0.43 +1.0 5,849,043 + QEN71_RS26240 0.43 +1.3 5,849,043 + QEN71_RS26240 0.43 -0.9 5,849,044 - QEN71_RS26240 0.43 -0.9 5,849,044 - QEN71_RS26240 0.43 +1.1 5,849,044 - QEN71_RS26240 0.43 -0.4 5,849,161 + QEN71_RS26240 0.59 +0.1 5,849,161 + QEN71_RS26240 0.59 +0.5
Or see this region's nucleotide sequence