Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02248

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
2,505,603	-		MIT1002_02244	0.62	+1.6
2,505,791	+		MIT1002_02245	0.34	+0.1
2,505,822	-		MIT1002_02245	0.45	+0.3
2,505,865	-		MIT1002_02245	0.59	-2.4
2,505,869	+		MIT1002_02245	0.61	+1.1
2,505,877	-		MIT1002_02245	0.63	-2.3
2,506,035	-				-3.2
2,506,037	+				-0.1
2,506,059	-				-0.8
2,506,060	-				+0.8
2,506,074	-				+0.8
2,506,165	+				-0.6
2,506,258	+		MIT1002_02246	0.77	-1.9
2,506,263	-		MIT1002_02246	0.82	-2.6
2,506,277	+				-1.2
2,506,277	+				+1.6
2,506,277	+				+0.5
2,506,277	+				+0.7
2,506,285	-				+1.0
2,506,285	-				+2.7
2,506,285	-				-2.7
2,506,285	-				+1.9
2,506,285	-				+0.0
2,506,285	-				+0.8
2,506,285	-				+1.7
2,506,285	-				+0.3
2,506,287	+				-0.3
2,506,295	-				+0.1
2,506,295	-				-3.9
2,506,368	+		MIT1002_02247	0.43	+0.2
2,506,381	-		MIT1002_02247	0.50	-1.2
2,506,444	-		MIT1002_02247	0.86	+0.3
2,506,462	-				-0.9
2,506,486	+				-2.6
2,506,493	+				-2.6
2,506,504	+				-3.1
2,506,512	-				+3.0
2,506,522	-				-1.1
2,506,537	+				+0.3
2,506,562	-				+2.6
2,506,680	-		MIT1002_02248	0.35	-2.0
2,506,714	+		MIT1002_02248	0.47	-0.5
2,506,724	+		MIT1002_02248	0.51	-0.1
2,506,756	+		MIT1002_02248	0.63	+1.3
2,506,781	-		MIT1002_02248	0.72	+1.8
2,506,861	+				-0.3
2,506,924	+				-2.6
2,506,950	+				+0.0
2,507,123	-		MIT1002_02249	0.33	-2.2
2,507,138	+		MIT1002_02249	0.37	-2.2
2,507,190	-		MIT1002_02249	0.52	+0.5
2,507,266	-		MIT1002_02249	0.74	+1.1
2,507,307	-		MIT1002_02249	0.85	+0.3
2,507,317	+		MIT1002_02249	0.88	-3.8
2,507,324	+				+0.2
2,507,324	+				+0.4
2,507,385	-				-1.2
2,507,433	+				-0.2
2,507,433	+				+0.5
2,507,444	+				-0.9
2,507,444	+				+0.5
2,507,452	-				-0.8
2,507,456	+				-0.6
2,507,519	-				+2.8
2,507,520	-		MIT1002_02250	0.10	-1.1
2,507,651	+		MIT1002_02250	0.42	-1.8
2,507,688	+		MIT1002_02250	0.51	+0.1
2,507,723	-		MIT1002_02250	0.59	-3.9
2,507,776	-		MIT1002_02250	0.72	-1.9
2,507,807	+		MIT1002_02250	0.80	-2.2
2,507,807	+		MIT1002_02250	0.80	+1.2
2,507,825	+		MIT1002_02250	0.84	-1.6
2,507,825	+		MIT1002_02250	0.84	-0.1
2,507,833	-		MIT1002_02250	0.86	-3.5
2,507,857	+				-0.0
2,507,857	+				+1.7