Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04197

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04196 and MIT1002_04197 are separated by 199 nucleotidesMIT1002_04197 and MIT1002_04198 are separated by 549 nucleotidesMIT1002_04198 and MIT1002_04199 are separated by 8 nucleotides MIT1002_04196: MIT1002_04196 - Transposase IS116/IS110/IS902 family protein, at 55,628 to 56,674 _04196 MIT1002_04197: MIT1002_04197 - hypothetical protein, at 56,874 to 57,230 _04197 MIT1002_04198: MIT1002_04198 - Transposase IS116/IS110/IS902 family protein, at 57,780 to 58,154 _04198 MIT1002_04199: MIT1002_04199 - Transposase, at 58,163 to 58,801 _04199 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2 3at 55.916 kb on + strand, within MIT1002_04196at 55.916 kb on + strand, within MIT1002_04196at 55.924 kb on - strand, within MIT1002_04196at 55.924 kb on - strand, within MIT1002_04196at 55.924 kb on - strand, within MIT1002_04196at 55.926 kb on + strand, within MIT1002_04196at 55.929 kb on - strand, within MIT1002_04196at 55.934 kb on + strand, within MIT1002_04196at 55.934 kb on - strand, within MIT1002_04196at 55.942 kb on - strand, within MIT1002_04196at 55.944 kb on + strand, within MIT1002_04196at 55.944 kb on - strand, within MIT1002_04196at 55.970 kb on + strand, within MIT1002_04196at 55.978 kb on - strand, within MIT1002_04196at 55.978 kb on - strand, within MIT1002_04196at 55.978 kb on - strand, within MIT1002_04196at 56.103 kb on - strand, within MIT1002_04196at 56.118 kb on + strand, within MIT1002_04196at 56.126 kb on - strand, within MIT1002_04196at 56.176 kb on - strand, within MIT1002_04196at 56.177 kb on - strand, within MIT1002_04196at 56.208 kb on + strand, within MIT1002_04196at 56.212 kb on - strand, within MIT1002_04196at 56.255 kb on + strand, within MIT1002_04196at 56.310 kb on + strand, within MIT1002_04196at 56.324 kb on - strand, within MIT1002_04196at 56.411 kb on + strand, within MIT1002_04196at 56.419 kb on - strand, within MIT1002_04196at 56.421 kb on + strand, within MIT1002_04196at 56.452 kb on - strand, within MIT1002_04196at 56.452 kb on - strand, within MIT1002_04196at 56.492 kb on - strand, within MIT1002_04196at 56.501 kb on + strand, within MIT1002_04196at 56.503 kb on + strand, within MIT1002_04196at 56.533 kb on + strand, within MIT1002_04196at 56.534 kb on - strand, within MIT1002_04196at 56.542 kb on - strand, within MIT1002_04196at 56.542 kb on - strand, within MIT1002_04196at 56.542 kb on - strand, within MIT1002_04196at 56.545 kb on + strand, within MIT1002_04196at 56.545 kb on + strand, within MIT1002_04196at 56.564 kb on - strand, within MIT1002_04196at 56.637 kb on - strandat 56.703 kb on + strandat 56.703 kb on + strandat 56.738 kb on + strandat 56.915 kb on - strand, within MIT1002_04197at 56.918 kb on + strand, within MIT1002_04197at 56.918 kb on + strand, within MIT1002_04197at 56.918 kb on + strand, within MIT1002_04197at 56.926 kb on - strand, within MIT1002_04197at 56.926 kb on - strand, within MIT1002_04197at 56.926 kb on - strand, within MIT1002_04197at 57.033 kb on + strand, within MIT1002_04197at 57.065 kb on + strand, within MIT1002_04197at 57.066 kb on + strand, within MIT1002_04197at 57.073 kb on - strand, within MIT1002_04197at 57.073 kb on - strand, within MIT1002_04197at 57.073 kb on - strand, within MIT1002_04197at 57.100 kb on + strand, within MIT1002_04197at 57.100 kb on + strand, within MIT1002_04197at 57.100 kb on + strand, within MIT1002_04197at 57.108 kb on - strand, within MIT1002_04197at 57.108 kb on - strand, within MIT1002_04197at 57.172 kb on + strand, within MIT1002_04197at 57.173 kb on + strand, within MIT1002_04197at 57.187 kb on - strand, within MIT1002_04197at 57.307 kb on - strandat 57.326 kb on - strandat 57.357 kb on - strandat 57.373 kb on + strandat 57.499 kb on + strandat 57.499 kb on + strandat 57.499 kb on + strandat 57.513 kb on - strandat 57.522 kb on + strandat 57.533 kb on - strandat 57.540 kb on + strandat 57.548 kb on - strandat 57.589 kb on + strandat 57.595 kb on - strandat 57.597 kb on - strandat 57.597 kb on - strandat 57.599 kb on + strandat 57.641 kb on - strandat 57.728 kb on - strandat 57.776 kb on - strandat 57.776 kb on - strandat 57.792 kb on + strandat 57.798 kb on - strandat 57.851 kb on - strand, within MIT1002_04198at 57.907 kb on - strand, within MIT1002_04198at 57.924 kb on - strand, within MIT1002_04198at 57.930 kb on + strand, within MIT1002_04198at 57.975 kb on - strand, within MIT1002_04198at 58.004 kb on + strand, within MIT1002_04198at 58.048 kb on - strand, within MIT1002_04198at 58.094 kb on + strand, within MIT1002_04198at 58.120 kb on + strandat 58.128 kb on - strandat 58.201 kb on + strandat 58.201 kb on + strandat 58.201 kb on + strandat 58.201 kb on + strandat 58.201 kb on + strandat 58.201 kb on + strandat 58.201 kb on + strandat 58.209 kb on - strandat 58.209 kb on - strandat 58.209 kb on - strandat 58.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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55,916 + MIT1002_04196 0.28 -0.6
55,916 + MIT1002_04196 0.28 -0.1
55,924 - MIT1002_04196 0.28 -1.3
55,924 - MIT1002_04196 0.28 +0.1
55,924 - MIT1002_04196 0.28 -1.2
55,926 + MIT1002_04196 0.28 -2.4
55,929 - MIT1002_04196 0.29 -1.4
55,934 + MIT1002_04196 0.29 -1.8
55,934 - MIT1002_04196 0.29 +0.1
55,942 - MIT1002_04196 0.30 +0.2
55,944 + MIT1002_04196 0.30 -1.8
55,944 - MIT1002_04196 0.30 +1.3
55,970 + MIT1002_04196 0.33 -0.1
55,978 - MIT1002_04196 0.33 -0.1
55,978 - MIT1002_04196 0.33 +0.0
55,978 - MIT1002_04196 0.33 -0.0
56,103 - MIT1002_04196 0.45 +0.9
56,118 + MIT1002_04196 0.47 -0.1
56,126 - MIT1002_04196 0.48 +0.5
56,176 - MIT1002_04196 0.52 -1.2
56,177 - MIT1002_04196 0.52 +0.5
56,208 + MIT1002_04196 0.55 +2.3
56,212 - MIT1002_04196 0.56 +0.6
56,255 + MIT1002_04196 0.60 +1.0
56,310 + MIT1002_04196 0.65 +0.3
56,324 - MIT1002_04196 0.66 +0.1
56,411 + MIT1002_04196 0.75 -0.6
56,419 - MIT1002_04196 0.76 -0.2
56,421 + MIT1002_04196 0.76 +1.2
56,452 - MIT1002_04196 0.79 +0.5
56,452 - MIT1002_04196 0.79 +0.7
56,492 - MIT1002_04196 0.83 -1.2
56,501 + MIT1002_04196 0.83 -1.4
56,503 + MIT1002_04196 0.84 -0.9
56,533 + MIT1002_04196 0.86 +0.9
56,534 - MIT1002_04196 0.87 -1.5
56,542 - MIT1002_04196 0.87 +1.0
56,542 - MIT1002_04196 0.87 +0.2
56,542 - MIT1002_04196 0.87 +0.8
56,545 + MIT1002_04196 0.88 +0.3
56,545 + MIT1002_04196 0.88 +0.2
56,564 - MIT1002_04196 0.89 +0.3
56,637 - -0.9
56,703 + -1.8
56,703 + -1.9
56,738 + +0.2
56,915 - MIT1002_04197 0.11 -2.1
56,918 + MIT1002_04197 0.12 +0.3
56,918 + MIT1002_04197 0.12 +0.6
56,918 + MIT1002_04197 0.12 +1.2
56,926 - MIT1002_04197 0.15 +0.2
56,926 - MIT1002_04197 0.15 -0.4
56,926 - MIT1002_04197 0.15 -1.1
57,033 + MIT1002_04197 0.45 +0.1
57,065 + MIT1002_04197 0.54 +0.1
57,066 + MIT1002_04197 0.54 +0.5
57,073 - MIT1002_04197 0.56 +0.4
57,073 - MIT1002_04197 0.56 +1.0
57,073 - MIT1002_04197 0.56 -1.9
57,100 + MIT1002_04197 0.63 +0.6
57,100 + MIT1002_04197 0.63 +0.5
57,100 + MIT1002_04197 0.63 +1.6
57,108 - MIT1002_04197 0.66 -0.5
57,108 - MIT1002_04197 0.66 -1.4
57,172 + MIT1002_04197 0.83 +0.5
57,173 + MIT1002_04197 0.84 -0.9
57,187 - MIT1002_04197 0.88 +0.8
57,307 - +0.3
57,326 - +0.1
57,357 - -0.2
57,373 + +0.5
57,499 + +1.1
57,499 + +0.8
57,499 + +0.2
57,513 - -1.3
57,522 + -0.7
57,533 - -0.6
57,540 + +0.6
57,548 - +0.2
57,589 + +0.8
57,595 - +1.7
57,597 - -0.1
57,597 - -0.4
57,599 + -0.2
57,641 - -0.2
57,728 - +0.8
57,776 - -0.8
57,776 - +0.7
57,792 + -0.8
57,798 - +1.7
57,851 - MIT1002_04198 0.19 -0.1
57,907 - MIT1002_04198 0.34 +0.6
57,924 - MIT1002_04198 0.38 -0.8
57,930 + MIT1002_04198 0.40 +0.6
57,975 - MIT1002_04198 0.52 +0.2
58,004 + MIT1002_04198 0.60 -0.7
58,048 - MIT1002_04198 0.71 +0.3
58,094 + MIT1002_04198 0.84 -0.1
58,120 + +3.6
58,128 - +0.8
58,201 + -0.9
58,201 + +2.5
58,201 + -0.6
58,201 + +0.5
58,201 + +0.9
58,201 + +1.2
58,201 + +0.1
58,209 - -1.7
58,209 - -0.8
58,209 - -1.6
58,209 - -1.0

Or see this region's nucleotide sequence