Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04814

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04813 and MPMX19_04814 are separated by 213 nucleotidesMPMX19_04814 and MPMX19_04815 are separated by 147 nucleotides MPMX19_04813: MPMX19_04813 - Phosphate-specific transport system accessory protein PhoU, at 217,245 to 218,024 _04813 MPMX19_04814: MPMX19_04814 - ATP phosphoribosyltransferase regulatory subunit, at 218,238 to 219,392 _04814 MPMX19_04815: MPMX19_04815 - Adenylosuccinate synthetase, at 219,540 to 220,832 _04815 Position (kb) 218 219 220Strain fitness (log2 ratio) -2 -1 0 1 2at 217.251 kb on - strandat 217.422 kb on + strand, within MPMX19_04813at 217.422 kb on + strand, within MPMX19_04813at 217.422 kb on + strand, within MPMX19_04813at 217.422 kb on + strand, within MPMX19_04813at 217.545 kb on + strand, within MPMX19_04813at 217.545 kb on + strand, within MPMX19_04813at 217.545 kb on + strand, within MPMX19_04813at 217.546 kb on - strand, within MPMX19_04813at 217.546 kb on - strand, within MPMX19_04813at 217.546 kb on - strand, within MPMX19_04813at 217.546 kb on - strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.668 kb on + strand, within MPMX19_04813at 217.669 kb on - strand, within MPMX19_04813at 217.669 kb on - strand, within MPMX19_04813at 217.669 kb on - strand, within MPMX19_04813at 217.669 kb on - strand, within MPMX19_04813at 217.669 kb on - strand, within MPMX19_04813at 217.669 kb on - strand, within MPMX19_04813at 217.669 kb on - strand, within MPMX19_04813at 217.734 kb on + strand, within MPMX19_04813at 217.734 kb on + strand, within MPMX19_04813at 217.734 kb on + strand, within MPMX19_04813at 217.734 kb on + strand, within MPMX19_04813at 217.734 kb on + strand, within MPMX19_04813at 217.734 kb on + strand, within MPMX19_04813at 217.734 kb on + strand, within MPMX19_04813at 217.734 kb on + strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.735 kb on - strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.764 kb on + strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.765 kb on - strand, within MPMX19_04813at 217.988 kb on + strandat 217.988 kb on + strandat 218.116 kb on + strandat 218.116 kb on + strandat 218.116 kb on + strandat 218.116 kb on + strandat 218.116 kb on + strandat 218.116 kb on + strandat 218.166 kb on + strandat 218.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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217,251 - -0.5
217,422 + MPMX19_04813 0.23 -1.6
217,422 + MPMX19_04813 0.23 +0.3
217,422 + MPMX19_04813 0.23 -1.5
217,422 + MPMX19_04813 0.23 -0.6
217,545 + MPMX19_04813 0.38 -0.8
217,545 + MPMX19_04813 0.38 +0.3
217,545 + MPMX19_04813 0.38 +0.2
217,546 - MPMX19_04813 0.39 +1.5
217,546 - MPMX19_04813 0.39 +1.6
217,546 - MPMX19_04813 0.39 +0.5
217,546 - MPMX19_04813 0.39 -0.7
217,668 + MPMX19_04813 0.54 -1.3
217,668 + MPMX19_04813 0.54 +0.2
217,668 + MPMX19_04813 0.54 +0.2
217,668 + MPMX19_04813 0.54 +0.5
217,668 + MPMX19_04813 0.54 -0.6
217,668 + MPMX19_04813 0.54 -0.5
217,668 + MPMX19_04813 0.54 +1.0
217,668 + MPMX19_04813 0.54 -0.4
217,668 + MPMX19_04813 0.54 -0.9
217,668 + MPMX19_04813 0.54 -0.1
217,669 - MPMX19_04813 0.54 -1.3
217,669 - MPMX19_04813 0.54 -1.3
217,669 - MPMX19_04813 0.54 +0.5
217,669 - MPMX19_04813 0.54 -1.8
217,669 - MPMX19_04813 0.54 +0.6
217,669 - MPMX19_04813 0.54 -0.5
217,669 - MPMX19_04813 0.54 -1.7
217,734 + MPMX19_04813 0.63 +0.3
217,734 + MPMX19_04813 0.63 -0.5
217,734 + MPMX19_04813 0.63 -0.1
217,734 + MPMX19_04813 0.63 -1.7
217,734 + MPMX19_04813 0.63 -2.1
217,734 + MPMX19_04813 0.63 +1.1
217,734 + MPMX19_04813 0.63 -1.5
217,734 + MPMX19_04813 0.63 -0.6
217,735 - MPMX19_04813 0.63 -1.6
217,735 - MPMX19_04813 0.63 -2.1
217,735 - MPMX19_04813 0.63 +0.3
217,735 - MPMX19_04813 0.63 +1.2
217,735 - MPMX19_04813 0.63 -0.2
217,735 - MPMX19_04813 0.63 -1.5
217,735 - MPMX19_04813 0.63 -1.3
217,735 - MPMX19_04813 0.63 -1.6
217,735 - MPMX19_04813 0.63 +0.7
217,764 + MPMX19_04813 0.67 +0.8
217,764 + MPMX19_04813 0.67 -0.2
217,764 + MPMX19_04813 0.67 +0.1
217,764 + MPMX19_04813 0.67 +0.2
217,764 + MPMX19_04813 0.67 +1.5
217,764 + MPMX19_04813 0.67 -0.1
217,764 + MPMX19_04813 0.67 +1.3
217,764 + MPMX19_04813 0.67 -0.3
217,764 + MPMX19_04813 0.67 -0.5
217,764 + MPMX19_04813 0.67 -0.3
217,764 + MPMX19_04813 0.67 -1.6
217,764 + MPMX19_04813 0.67 -0.6
217,764 + MPMX19_04813 0.67 +0.5
217,764 + MPMX19_04813 0.67 -1.5
217,764 + MPMX19_04813 0.67 -0.1
217,764 + MPMX19_04813 0.67 -1.1
217,764 + MPMX19_04813 0.67 -1.1
217,764 + MPMX19_04813 0.67 -0.6
217,764 + MPMX19_04813 0.67 -0.3
217,764 + MPMX19_04813 0.67 -0.1
217,765 - MPMX19_04813 0.67 +0.3
217,765 - MPMX19_04813 0.67 +0.4
217,765 - MPMX19_04813 0.67 +0.3
217,765 - MPMX19_04813 0.67 +0.8
217,765 - MPMX19_04813 0.67 +0.8
217,765 - MPMX19_04813 0.67 -0.8
217,765 - MPMX19_04813 0.67 +0.1
217,765 - MPMX19_04813 0.67 +1.0
217,765 - MPMX19_04813 0.67 -0.8
217,765 - MPMX19_04813 0.67 -0.4
217,765 - MPMX19_04813 0.67 +1.5
217,765 - MPMX19_04813 0.67 +0.9
217,765 - MPMX19_04813 0.67 +0.7
217,765 - MPMX19_04813 0.67 -0.5
217,765 - MPMX19_04813 0.67 -1.2
217,765 - MPMX19_04813 0.67 -0.8
217,765 - MPMX19_04813 0.67 -0.4
217,765 - MPMX19_04813 0.67 -2.5
217,765 - MPMX19_04813 0.67 -0.1
217,765 - MPMX19_04813 0.67 +1.0
217,988 + +0.5
217,988 + -0.3
218,116 + -0.9
218,116 + +2.3
218,116 + -1.1
218,116 + -1.8
218,116 + -0.8
218,116 + -0.4
218,166 + -0.5
218,166 + +1.7

Or see this region's nucleotide sequence