Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4875 and GFF4876 are separated by 209 nucleotides GFF4876 and GFF4877 are separated by 93 nucleotides GFF4877 and GFF4878 are separated by 127 nucleotides GFF4878 and GFF4879 are separated by 57 nucleotides GFF4879 and GFF4880 are separated by 73 nucleotides
GFF4875 - hypothetical protein, at 25,103 to 25,327
GFF4875
GFF4876 - Glutaredoxin 4, at 25,537 to 25,866
GFF4876
GFF4877 - putative protein RP812, at 25,960 to 26,193
GFF4877
GFF4878 - hypothetical protein, at 26,321 to 27,295
GFF4878
GFF4879 - hypothetical protein, at 27,353 to 27,835
GFF4879
GFF4880 - hypothetical protein, at 27,909 to 28,304
GFF4880
Position (kb) 26
27
28 Strain fitness (log2 ratio) -1
0
1
2 at 25.348 kb on - strand at 25.401 kb on + strand at 25.401 kb on + strand at 25.402 kb on - strand at 25.402 kb on - strand at 25.475 kb on + strand at 25.475 kb on + strand at 25.476 kb on - strand at 25.476 kb on - strand at 25.637 kb on + strand, within GFF4876 at 25.643 kb on + strand, within GFF4876 at 25.643 kb on + strand, within GFF4876 at 25.643 kb on + strand, within GFF4876 at 25.643 kb on + strand, within GFF4876 at 25.643 kb on + strand, within GFF4876 at 25.644 kb on - strand, within GFF4876 at 25.644 kb on - strand, within GFF4876 at 25.674 kb on - strand, within GFF4876 at 25.728 kb on - strand, within GFF4876 at 25.728 kb on - strand, within GFF4876 at 25.845 kb on + strand at 25.845 kb on + strand at 25.845 kb on + strand at 25.845 kb on + strand at 25.845 kb on + strand at 25.845 kb on + strand at 25.846 kb on - strand at 26.031 kb on - strand, within GFF4877 at 26.096 kb on + strand, within GFF4877 at 26.096 kb on + strand, within GFF4877 at 26.097 kb on - strand, within GFF4877 at 26.097 kb on - strand, within GFF4877 at 26.267 kb on + strand at 26.362 kb on - strand at 26.398 kb on + strand at 26.398 kb on + strand at 26.445 kb on + strand, within GFF4878 at 26.446 kb on - strand, within GFF4878 at 26.615 kb on + strand, within GFF4878 at 26.615 kb on + strand, within GFF4878 at 26.616 kb on - strand, within GFF4878 at 26.616 kb on - strand, within GFF4878 at 26.616 kb on - strand, within GFF4878 at 26.783 kb on + strand, within GFF4878 at 26.783 kb on + strand, within GFF4878 at 26.783 kb on + strand, within GFF4878 at 27.036 kb on - strand, within GFF4878 at 27.293 kb on + strand at 27.294 kb on - strand at 27.294 kb on - strand at 27.346 kb on + strand at 27.346 kb on + strand at 27.347 kb on - strand at 27.381 kb on - strand at 27.514 kb on - strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.651 kb on - strand, within GFF4879 at 27.651 kb on - strand, within GFF4879 at 27.651 kb on - strand, within GFF4879 at 27.690 kb on - strand, within GFF4879 at 27.690 kb on - strand, within GFF4879 at 27.793 kb on - strand at 27.867 kb on + strand at 27.867 kb on + strand at 27.867 kb on + strand at 27.868 kb on - strand at 27.868 kb on - strand at 27.873 kb on - strand at 28.071 kb on + strand, within GFF4880 at 28.071 kb on + strand, within GFF4880 at 28.071 kb on + strand, within GFF4880 at 28.072 kb on - strand, within GFF4880 at 28.072 kb on - strand, within GFF4880
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 25,348 - -0.5 25,401 + -0.3 25,401 + -1.0 25,402 - -0.1 25,402 - -0.1 25,475 + +1.8 25,475 + -0.2 25,476 - +1.5 25,476 - -0.2 25,637 + GFF4876 0.30 +0.6 25,643 + GFF4876 0.32 -0.0 25,643 + GFF4876 0.32 -1.2 25,643 + GFF4876 0.32 -1.0 25,643 + GFF4876 0.32 +0.4 25,643 + GFF4876 0.32 +0.6 25,644 - GFF4876 0.32 +1.3 25,644 - GFF4876 0.32 +1.0 25,674 - GFF4876 0.42 +0.5 25,728 - GFF4876 0.58 -0.1 25,728 - GFF4876 0.58 -0.4 25,845 + +0.8 25,845 + +1.0 25,845 + +0.7 25,845 + -0.5 25,845 + -0.0 25,845 + +1.0 25,846 - -0.3 26,031 - GFF4877 0.30 -0.7 26,096 + GFF4877 0.58 +0.2 26,096 + GFF4877 0.58 +1.0 26,097 - GFF4877 0.59 +0.3 26,097 - GFF4877 0.59 +0.2 26,267 + -0.1 26,362 - +0.5 26,398 + -0.9 26,398 + +1.3 26,445 + GFF4878 0.13 -1.2 26,446 - GFF4878 0.13 +0.0 26,615 + GFF4878 0.30 +0.0 26,615 + GFF4878 0.30 -0.2 26,616 - GFF4878 0.30 +1.1 26,616 - GFF4878 0.30 -0.7 26,616 - GFF4878 0.30 -0.6 26,783 + GFF4878 0.47 +0.5 26,783 + GFF4878 0.47 -0.7 26,783 + GFF4878 0.47 +0.2 27,036 - GFF4878 0.73 +0.2 27,293 + +0.3 27,294 - -0.7 27,294 - +0.4 27,346 + -0.0 27,346 + +1.0 27,347 - -0.0 27,381 - +1.0 27,514 - GFF4879 0.33 +0.2 27,548 + GFF4879 0.40 +0.1 27,548 + GFF4879 0.40 +0.5 27,548 + GFF4879 0.40 -0.5 27,548 + GFF4879 0.40 +0.4 27,548 + GFF4879 0.40 +1.7 27,549 - GFF4879 0.41 -0.6 27,549 - GFF4879 0.41 -0.6 27,549 - GFF4879 0.41 -0.3 27,549 - GFF4879 0.41 +0.5 27,549 - GFF4879 0.41 +0.5 27,650 + GFF4879 0.61 -0.0 27,650 + GFF4879 0.61 +0.8 27,650 + GFF4879 0.61 +0.2 27,650 + GFF4879 0.61 -0.5 27,650 + GFF4879 0.61 -0.6 27,651 - GFF4879 0.62 -0.7 27,651 - GFF4879 0.62 -0.3 27,651 - GFF4879 0.62 +1.1 27,690 - GFF4879 0.70 +0.2 27,690 - GFF4879 0.70 -0.8 27,793 - -1.0 27,867 + -0.1 27,867 + +0.9 27,867 + -0.8 27,868 - +0.7 27,868 - -0.5 27,873 - -0.6 28,071 + GFF4880 0.41 +1.1 28,071 + GFF4880 0.41 +0.7 28,071 + GFF4880 0.41 +0.7 28,072 - GFF4880 0.41 -1.2 28,072 - GFF4880 0.41 +0.3
Or see this region's nucleotide sequence