Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4714 and GFF4715 are separated by 146 nucleotides GFF4715 and GFF4716 overlap by 4 nucleotides GFF4716 and GFF4717 overlap by 4 nucleotides
GFF4714 - Transaldolase, at 126,352 to 127,101
GFF4714
GFF4715 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 127,248 to 128,468
GFF4715
GFF4716 - Ribosomal RNA large subunit methyltransferase E, at 128,465 to 129,193
GFF4716
GFF4717 - putative transport protein HsrA, at 129,190 to 130,629
GFF4717
Position (kb) 127
128
129 Strain fitness (log2 ratio) -2
-1
0
1
2 at 126.317 kb on - strand at 126.319 kb on - strand at 126.319 kb on - strand at 126.319 kb on - strand at 126.496 kb on + strand, within GFF4714 at 126.543 kb on + strand, within GFF4714 at 126.544 kb on - strand, within GFF4714 at 126.667 kb on + strand, within GFF4714 at 126.667 kb on + strand, within GFF4714 at 126.667 kb on + strand, within GFF4714 at 126.826 kb on + strand, within GFF4714 at 126.827 kb on - strand, within GFF4714 at 126.933 kb on + strand, within GFF4714 at 127.107 kb on - strand at 127.107 kb on - strand at 127.107 kb on - strand at 127.107 kb on - strand at 127.107 kb on - strand at 127.165 kb on + strand at 127.165 kb on + strand at 127.452 kb on + strand, within GFF4715 at 127.452 kb on + strand, within GFF4715 at 128.206 kb on + strand, within GFF4715 at 128.206 kb on + strand, within GFF4715 at 128.206 kb on + strand, within GFF4715 at 128.318 kb on + strand, within GFF4715 at 129.191 kb on + strand at 129.192 kb on - strand at 129.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 126,317 - +0.4 126,319 - -0.8 126,319 - -0.2 126,319 - -1.7 126,496 + GFF4714 0.19 -0.3 126,543 + GFF4714 0.25 -1.8 126,544 - GFF4714 0.26 +0.5 126,667 + GFF4714 0.42 -0.2 126,667 + GFF4714 0.42 +1.1 126,667 + GFF4714 0.42 -1.1 126,826 + GFF4714 0.63 -1.4 126,827 - GFF4714 0.63 +1.2 126,933 + GFF4714 0.77 +0.1 127,107 - +0.2 127,107 - +0.1 127,107 - +0.1 127,107 - +0.3 127,107 - -0.5 127,165 + -2.3 127,165 + +0.3 127,452 + GFF4715 0.17 -0.6 127,452 + GFF4715 0.17 -1.7 128,206 + GFF4715 0.78 -0.1 128,206 + GFF4715 0.78 -1.2 128,206 + GFF4715 0.78 -2.5 128,318 + GFF4715 0.88 -0.5 129,191 + +0.9 129,192 - -0.1 129,313 + +2.1
Or see this region's nucleotide sequence