Strain Fitness in Xanthobacter sp. DMC5 around GFF3428

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3427 and GFF3428 are separated by 371 nucleotidesGFF3428 and GFF3429 are separated by 17 nucleotides GFF3427 - Glutamine-dependent NAD(+) synthetase, at 274,390 to 276,435 GFF3427 GFF3428 - hypothetical protein, at 276,807 to 279,047 GFF3428 GFF3429 - HTH-type transcriptional regulator CdhR, at 279,065 to 280,168 GFF3429 Position (kb) 276 277 278 279 280Strain fitness (log2 ratio) -1 0 1 2at 275.872 kb on + strand, within GFF3427at 275.873 kb on - strand, within GFF3427at 275.873 kb on - strand, within GFF3427at 275.900 kb on - strand, within GFF3427at 276.115 kb on + strand, within GFF3427at 276.115 kb on + strand, within GFF3427at 276.433 kb on + strandat 276.626 kb on - strandat 276.688 kb on + strandat 276.776 kb on + strandat 276.776 kb on + strandat 276.969 kb on + strandat 276.969 kb on + strandat 276.969 kb on + strandat 276.970 kb on - strandat 276.970 kb on - strandat 276.970 kb on - strandat 277.014 kb on - strandat 277.014 kb on - strandat 277.014 kb on - strandat 277.014 kb on - strandat 277.245 kb on + strand, within GFF3428at 277.245 kb on + strand, within GFF3428at 277.245 kb on + strand, within GFF3428at 277.245 kb on + strand, within GFF3428at 277.245 kb on + strand, within GFF3428at 277.246 kb on - strand, within GFF3428at 277.246 kb on - strand, within GFF3428at 277.246 kb on - strand, within GFF3428at 277.374 kb on + strand, within GFF3428at 277.374 kb on + strand, within GFF3428at 277.374 kb on + strand, within GFF3428at 277.375 kb on - strand, within GFF3428at 277.375 kb on - strand, within GFF3428at 277.375 kb on - strand, within GFF3428at 277.392 kb on + strand, within GFF3428at 277.392 kb on + strand, within GFF3428at 277.392 kb on + strand, within GFF3428at 277.393 kb on - strand, within GFF3428at 277.393 kb on - strand, within GFF3428at 277.393 kb on - strand, within GFF3428at 277.393 kb on - strand, within GFF3428at 277.562 kb on - strand, within GFF3428at 277.609 kb on + strand, within GFF3428at 277.609 kb on + strand, within GFF3428at 277.609 kb on + strand, within GFF3428at 277.610 kb on - strand, within GFF3428at 277.722 kb on + strand, within GFF3428at 277.723 kb on - strand, within GFF3428at 277.724 kb on + strand, within GFF3428at 277.724 kb on + strand, within GFF3428at 277.725 kb on - strand, within GFF3428at 277.761 kb on + strand, within GFF3428at 277.761 kb on + strand, within GFF3428at 277.762 kb on - strand, within GFF3428at 277.762 kb on - strand, within GFF3428at 277.762 kb on - strand, within GFF3428at 277.762 kb on - strand, within GFF3428at 277.806 kb on + strand, within GFF3428at 277.807 kb on - strand, within GFF3428at 277.983 kb on + strand, within GFF3428at 278.058 kb on + strand, within GFF3428at 278.058 kb on + strand, within GFF3428at 278.058 kb on + strand, within GFF3428at 278.059 kb on - strand, within GFF3428at 278.059 kb on - strand, within GFF3428at 278.059 kb on - strand, within GFF3428at 278.175 kb on + strand, within GFF3428at 278.175 kb on + strand, within GFF3428at 278.175 kb on + strand, within GFF3428at 278.175 kb on + strand, within GFF3428at 278.176 kb on - strand, within GFF3428at 278.177 kb on + strand, within GFF3428at 278.178 kb on - strand, within GFF3428at 278.389 kb on + strand, within GFF3428at 278.389 kb on + strand, within GFF3428at 278.389 kb on + strand, within GFF3428at 278.389 kb on + strand, within GFF3428at 278.389 kb on + strand, within GFF3428at 278.390 kb on - strand, within GFF3428at 278.390 kb on - strand, within GFF3428at 278.433 kb on + strand, within GFF3428at 278.487 kb on + strand, within GFF3428at 278.488 kb on - strand, within GFF3428at 278.488 kb on - strand, within GFF3428at 278.985 kb on + strandat 278.986 kb on - strandat 279.066 kb on + strandat 279.285 kb on + strand, within GFF3429at 279.285 kb on + strand, within GFF3429at 279.285 kb on + strand, within GFF3429at 279.286 kb on - strand, within GFF3429at 279.286 kb on - strand, within GFF3429at 279.678 kb on + strand, within GFF3429at 279.678 kb on + strand, within GFF3429at 279.684 kb on + strand, within GFF3429at 279.684 kb on + strand, within GFF3429at 279.685 kb on - strand, within GFF3429at 279.685 kb on - strand, within GFF3429at 279.796 kb on - strand, within GFF3429at 279.796 kb on - strand, within GFF3429at 279.856 kb on + strand, within GFF3429at 279.856 kb on + strand, within GFF3429at 279.856 kb on + strand, within GFF3429at 279.856 kb on + strand, within GFF3429at 279.856 kb on + strand, within GFF3429at 279.857 kb on - strand, within GFF3429at 279.857 kb on - strand, within GFF3429at 279.857 kb on - strand, within GFF3429at 279.858 kb on + strand, within GFF3429at 279.858 kb on + strand, within GFF3429at 279.858 kb on + strand, within GFF3429at 279.858 kb on + strand, within GFF3429at 279.859 kb on - strand, within GFF3429at 279.859 kb on - strand, within GFF3429

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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275,872 + GFF3427 0.72 -0.4
275,873 - GFF3427 0.72 -1.0
275,873 - GFF3427 0.72 -1.0
275,900 - GFF3427 0.74 -0.7
276,115 + GFF3427 0.84 -0.8
276,115 + GFF3427 0.84 +0.1
276,433 + +0.5
276,626 - -0.3
276,688 + +0.9
276,776 + -0.1
276,776 + +0.2
276,969 + +0.1
276,969 + -0.1
276,969 + +0.8
276,970 - +1.9
276,970 - +0.6
276,970 - -0.4
277,014 - +1.2
277,014 - +0.6
277,014 - -0.1
277,014 - -0.4
277,245 + GFF3428 0.20 +0.6
277,245 + GFF3428 0.20 +0.0
277,245 + GFF3428 0.20 -1.5
277,245 + GFF3428 0.20 +0.5
277,245 + GFF3428 0.20 +1.1
277,246 - GFF3428 0.20 +2.0
277,246 - GFF3428 0.20 -0.5
277,246 - GFF3428 0.20 -0.4
277,374 + GFF3428 0.25 -1.0
277,374 + GFF3428 0.25 +0.0
277,374 + GFF3428 0.25 +0.3
277,375 - GFF3428 0.25 -0.4
277,375 - GFF3428 0.25 +0.6
277,375 - GFF3428 0.25 -0.4
277,392 + GFF3428 0.26 -0.1
277,392 + GFF3428 0.26 -0.1
277,392 + GFF3428 0.26 +0.7
277,393 - GFF3428 0.26 +0.1
277,393 - GFF3428 0.26 -0.0
277,393 - GFF3428 0.26 -0.0
277,393 - GFF3428 0.26 +1.5
277,562 - GFF3428 0.34 -0.0
277,609 + GFF3428 0.36 +0.4
277,609 + GFF3428 0.36 -0.8
277,609 + GFF3428 0.36 +0.6
277,610 - GFF3428 0.36 -1.2
277,722 + GFF3428 0.41 +0.9
277,723 - GFF3428 0.41 -0.8
277,724 + GFF3428 0.41 -0.0
277,724 + GFF3428 0.41 +2.0
277,725 - GFF3428 0.41 -0.1
277,761 + GFF3428 0.43 +0.2
277,761 + GFF3428 0.43 +0.5
277,762 - GFF3428 0.43 +0.6
277,762 - GFF3428 0.43 +0.7
277,762 - GFF3428 0.43 +0.7
277,762 - GFF3428 0.43 +0.1
277,806 + GFF3428 0.45 +1.0
277,807 - GFF3428 0.45 +2.2
277,983 + GFF3428 0.52 +0.3
278,058 + GFF3428 0.56 +1.1
278,058 + GFF3428 0.56 +0.5
278,058 + GFF3428 0.56 +0.3
278,059 - GFF3428 0.56 +0.7
278,059 - GFF3428 0.56 -0.6
278,059 - GFF3428 0.56 +0.7
278,175 + GFF3428 0.61 -0.8
278,175 + GFF3428 0.61 +0.8
278,175 + GFF3428 0.61 +0.6
278,175 + GFF3428 0.61 +1.3
278,176 - GFF3428 0.61 +0.1
278,177 + GFF3428 0.61 -0.3
278,178 - GFF3428 0.61 +0.6
278,389 + GFF3428 0.71 +0.2
278,389 + GFF3428 0.71 +0.6
278,389 + GFF3428 0.71 +0.1
278,389 + GFF3428 0.71 +0.1
278,389 + GFF3428 0.71 +0.5
278,390 - GFF3428 0.71 -1.1
278,390 - GFF3428 0.71 +0.7
278,433 + GFF3428 0.73 -0.3
278,487 + GFF3428 0.75 +1.0
278,488 - GFF3428 0.75 +0.1
278,488 - GFF3428 0.75 -0.1
278,985 + +0.4
278,986 - +0.7
279,066 + -0.1
279,285 + GFF3429 0.20 -0.0
279,285 + GFF3429 0.20 +0.5
279,285 + GFF3429 0.20 +0.6
279,286 - GFF3429 0.20 +0.7
279,286 - GFF3429 0.20 +2.3
279,678 + GFF3429 0.56 -0.4
279,678 + GFF3429 0.56 +1.1
279,684 + GFF3429 0.56 +1.0
279,684 + GFF3429 0.56 +1.1
279,685 - GFF3429 0.56 +0.0
279,685 - GFF3429 0.56 +0.3
279,796 - GFF3429 0.66 -0.0
279,796 - GFF3429 0.66 -1.2
279,856 + GFF3429 0.72 +2.0
279,856 + GFF3429 0.72 +0.6
279,856 + GFF3429 0.72 -0.4
279,856 + GFF3429 0.72 -0.0
279,856 + GFF3429 0.72 -0.0
279,857 - GFF3429 0.72 -1.3
279,857 - GFF3429 0.72 +0.7
279,857 - GFF3429 0.72 +0.1
279,858 + GFF3429 0.72 +0.4
279,858 + GFF3429 0.72 -0.3
279,858 + GFF3429 0.72 -0.7
279,858 + GFF3429 0.72 -0.1
279,859 - GFF3429 0.72 +0.5
279,859 - GFF3429 0.72 -0.5

Or see this region's nucleotide sequence