Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04105

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 2
4,607,546	-		MIT1002_04104	0.41	-0.6
4,607,582	+		MIT1002_04104	0.44	-0.1
4,607,604	+		MIT1002_04104	0.46	-2.2
4,607,604	+		MIT1002_04104	0.46	-0.8
4,607,604	+		MIT1002_04104	0.46	+0.6
4,607,604	+		MIT1002_04104	0.46	+0.4
4,607,604	+		MIT1002_04104	0.46	+0.6
4,607,604	+		MIT1002_04104	0.46	+0.2
4,607,604	+		MIT1002_04104	0.46	-1.0
4,607,604	-		MIT1002_04104	0.46	-1.9
4,607,607	-		MIT1002_04104	0.46	-0.1
4,607,612	-		MIT1002_04104	0.46	+0.3
4,607,612	-		MIT1002_04104	0.46	-0.4
4,607,612	-		MIT1002_04104	0.46	-0.3
4,607,612	-		MIT1002_04104	0.46	+1.2
4,607,612	-		MIT1002_04104	0.46	-0.1
4,607,612	-		MIT1002_04104	0.46	+0.2
4,607,612	-		MIT1002_04104	0.46	-1.6
4,607,612	-		MIT1002_04104	0.46	+0.7
4,607,612	-		MIT1002_04104	0.46	+0.9
4,607,612	-		MIT1002_04104	0.46	+0.7
4,607,612	-		MIT1002_04104	0.46	-1.2
4,607,612	-		MIT1002_04104	0.46	+0.5
4,607,612	-		MIT1002_04104	0.46	-0.5
4,607,612	-		MIT1002_04104	0.46	-0.6
4,607,612	-		MIT1002_04104	0.46	-2.7
4,607,612	-		MIT1002_04104	0.46	+0.2
4,607,612	-		MIT1002_04104	0.46	+1.7
4,607,612	-		MIT1002_04104	0.46	-0.8
4,607,646	+		MIT1002_04104	0.49	-0.2
4,607,655	-		MIT1002_04104	0.50	+0.5
4,607,688	+		MIT1002_04104	0.53	+0.7
4,607,691	-		MIT1002_04104	0.53	-1.1
4,607,696	-		MIT1002_04104	0.54	+0.4
4,607,701	-		MIT1002_04104	0.54	-1.9
4,607,771	+		MIT1002_04104	0.60	-0.2
4,607,798	+		MIT1002_04104	0.62	+1.7
4,607,812	+		MIT1002_04104	0.64	-0.3
4,607,835	-		MIT1002_04104	0.66	-0.0
4,607,842	-		MIT1002_04104	0.66	+1.1
4,607,991	-		MIT1002_04104	0.79	-1.6
4,607,996	+		MIT1002_04104	0.79	+2.9
4,607,996	+		MIT1002_04104	0.79	-0.0
4,608,004	-		MIT1002_04104	0.80	+0.4
4,608,004	-		MIT1002_04104	0.80	+1.3
4,608,046	+		MIT1002_04104	0.84	-0.6
4,608,169	+				+0.7
4,608,294	+				-0.0
4,608,357	-				+0.6
4,608,457	+				+2.2
4,608,543	-		MIT1002_04105	0.22	-0.6
4,608,572	+		MIT1002_04105	0.28	-2.4
4,608,578	-		MIT1002_04105	0.30	-0.8
4,608,580	-		MIT1002_04105	0.30	-0.1
4,608,591	-		MIT1002_04105	0.32	-1.2
4,608,617	+		MIT1002_04105	0.38	+0.8
4,608,624	+		MIT1002_04105	0.40	-0.6
4,608,625	-		MIT1002_04105	0.40	-3.0
4,608,625	-		MIT1002_04105	0.40	+1.1
4,608,625	-		MIT1002_04105	0.40	-1.3
4,608,683	-		MIT1002_04105	0.52	-0.9
4,608,683	-		MIT1002_04105	0.52	-1.7
4,608,683	-		MIT1002_04105	0.52	+0.5
4,608,690	-		MIT1002_04105	0.54	+0.0
4,608,738	+		MIT1002_04105	0.64	-0.5
4,608,764	+		MIT1002_04105	0.69	-1.2
4,608,786	+		MIT1002_04105	0.74	+1.2
4,608,786	+		MIT1002_04105	0.74	-0.9
4,608,794	-		MIT1002_04105	0.76	+2.1
4,608,827	-		MIT1002_04105	0.83	+1.2
4,608,865	+				+1.2
4,608,896	-				-1.5
4,608,963	+				-0.5
4,608,963	+				-0.1
4,608,963	+				+0.3
4,608,963	+				-0.3
4,608,963	+				+1.7
4,608,963	+				-0.2
4,608,963	+				+1.9
4,608,963	+				-1.2
4,608,963	+				+0.5
4,608,963	+				+0.0
4,608,963	-				+1.0
4,608,971	-				+0.5
4,608,971	-				+0.0
4,608,971	-				-2.5
4,608,971	-				-0.5
4,608,971	-				-1.3
4,609,031	+		MIT1002_04106	0.11	-0.6
4,609,071	-		MIT1002_04106	0.17	-0.0
4,609,125	+		MIT1002_04106	0.26	+0.4
4,609,148	-		MIT1002_04106	0.29	+0.6
4,609,153	-		MIT1002_04106	0.30	+0.9
4,609,159	+		MIT1002_04106	0.31	+0.9
4,609,159	+		MIT1002_04106	0.31	+0.8
4,609,159	+		MIT1002_04106	0.31	-2.2
4,609,164	+		MIT1002_04106	0.32	+1.3
4,609,167	-		MIT1002_04106	0.32	-0.9
4,609,167	-		MIT1002_04106	0.32	-0.2
4,609,167	-		MIT1002_04106	0.32	+0.0
4,609,167	-		MIT1002_04106	0.32	-0.7
4,609,167	-		MIT1002_04106	0.32	-0.7
4,609,169	+		MIT1002_04106	0.33	+0.7
4,609,172	-		MIT1002_04106	0.33	-0.5
4,609,174	+		MIT1002_04106	0.33	-0.2
4,609,235	+		MIT1002_04106	0.43	-0.1
4,609,243	-		MIT1002_04106	0.44	+0.5
4,609,248	+		MIT1002_04106	0.45	+0.9
4,609,275	-		MIT1002_04106	0.49	-0.5
4,609,291	-		MIT1002_04106	0.52	+0.8
4,609,405	-		MIT1002_04106	0.69	-0.6
4,609,446	-		MIT1002_04106	0.76	+0.3
4,609,557	-				+1.1
4,609,816	-				+0.0
4,609,831	-				-1.0
4,609,850	+				-0.7
4,609,855	+				-0.5
4,609,858	-				+1.4
4,609,858	-				-0.9
4,609,904	+				-0.7