Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05847 and MPMX19_05848 are separated by 20 nucleotides MPMX19_05848 and MPMX19_05849 are separated by 35 nucleotides
MPMX19_05847: MPMX19_05847 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 580,686 to 581,861
_05847
MPMX19_05848: MPMX19_05848 - Glutamine transport ATP-binding protein GlnQ, at 581,882 to 582,625
_05848
MPMX19_05849: MPMX19_05849 - TorCAD operon transcriptional regulatory protein TorR, at 582,661 to 583,368
_05849
Position (kb) 581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.040 kb on + strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.041 kb on - strand, within MPMX19_05847 at 581.046 kb on + strand, within MPMX19_05847 at 581.046 kb on + strand, within MPMX19_05847 at 581.046 kb on + strand, within MPMX19_05847 at 581.047 kb on - strand, within MPMX19_05847 at 581.047 kb on - strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.208 kb on + strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.209 kb on - strand, within MPMX19_05847 at 581.544 kb on + strand, within MPMX19_05847 at 581.545 kb on - strand, within MPMX19_05847 at 581.545 kb on - strand, within MPMX19_05847 at 581.545 kb on - strand, within MPMX19_05847 at 581.574 kb on + strand, within MPMX19_05847 at 581.574 kb on + strand, within MPMX19_05847 at 581.574 kb on + strand, within MPMX19_05847 at 581.574 kb on + strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.575 kb on - strand, within MPMX19_05847 at 581.694 kb on + strand, within MPMX19_05847 at 581.694 kb on + strand, within MPMX19_05847 at 581.694 kb on + strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.695 kb on - strand, within MPMX19_05847 at 581.748 kb on + strand at 581.748 kb on + strand at 581.749 kb on - strand at 581.749 kb on - strand at 581.749 kb on - strand at 581.749 kb on - strand at 581.749 kb on - strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.763 kb on + strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.764 kb on - strand at 581.814 kb on + strand at 581.815 kb on - strand at 581.847 kb on + strand at 581.847 kb on + strand at 581.847 kb on + strand at 581.847 kb on + strand at 581.847 kb on + strand at 581.848 kb on - strand at 581.848 kb on - strand at 581.848 kb on - strand at 581.848 kb on - strand at 581.927 kb on + strand at 581.928 kb on - strand at 581.936 kb on + strand at 581.936 kb on + strand at 581.936 kb on + strand at 581.936 kb on + strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 581.937 kb on - strand at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.254 kb on + strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.255 kb on - strand, within MPMX19_05848 at 582.511 kb on + strand, within MPMX19_05848 at 582.511 kb on + strand, within MPMX19_05848 at 582.511 kb on + strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.512 kb on - strand, within MPMX19_05848 at 582.630 kb on + strand at 582.630 kb on + strand at 582.630 kb on + strand at 582.630 kb on + strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.631 kb on - strand at 582.721 kb on + strand at 582.721 kb on + strand at 582.721 kb on + strand at 582.721 kb on + strand at 582.722 kb on - strand at 582.722 kb on - strand at 582.722 kb on - strand at 582.722 kb on - strand at 582.955 kb on + strand, within MPMX19_05849 at 582.955 kb on + strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 583.195 kb on + strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.535 kb on + strand at 583.535 kb on + strand at 583.535 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 581,040 + MPMX19_05847 0.30 -1.0 581,040 + MPMX19_05847 0.30 -0.2 581,040 + MPMX19_05847 0.30 -1.5 581,040 + MPMX19_05847 0.30 -0.0 581,040 + MPMX19_05847 0.30 +0.6 581,040 + MPMX19_05847 0.30 -0.6 581,040 + MPMX19_05847 0.30 +0.4 581,041 - MPMX19_05847 0.30 -1.4 581,041 - MPMX19_05847 0.30 +1.0 581,041 - MPMX19_05847 0.30 -0.8 581,041 - MPMX19_05847 0.30 -0.2 581,041 - MPMX19_05847 0.30 -0.4 581,041 - MPMX19_05847 0.30 +0.5 581,046 + MPMX19_05847 0.31 +0.1 581,046 + MPMX19_05847 0.31 -0.1 581,046 + MPMX19_05847 0.31 -0.6 581,047 - MPMX19_05847 0.31 -1.0 581,047 - MPMX19_05847 0.31 -0.6 581,208 + MPMX19_05847 0.44 -0.6 581,208 + MPMX19_05847 0.44 +1.1 581,208 + MPMX19_05847 0.44 -2.0 581,208 + MPMX19_05847 0.44 -0.3 581,208 + MPMX19_05847 0.44 -0.2 581,208 + MPMX19_05847 0.44 +0.9 581,208 + MPMX19_05847 0.44 +0.4 581,208 + MPMX19_05847 0.44 +0.2 581,208 + MPMX19_05847 0.44 -0.8 581,208 + MPMX19_05847 0.44 -0.9 581,208 + MPMX19_05847 0.44 -1.2 581,208 + MPMX19_05847 0.44 -1.2 581,208 + MPMX19_05847 0.44 -0.7 581,208 + MPMX19_05847 0.44 -2.2 581,208 + MPMX19_05847 0.44 -0.4 581,209 - MPMX19_05847 0.44 -0.9 581,209 - MPMX19_05847 0.44 +0.4 581,209 - MPMX19_05847 0.44 -0.5 581,209 - MPMX19_05847 0.44 -1.2 581,209 - MPMX19_05847 0.44 +0.1 581,209 - MPMX19_05847 0.44 +0.6 581,209 - MPMX19_05847 0.44 -0.6 581,209 - MPMX19_05847 0.44 +0.1 581,209 - MPMX19_05847 0.44 -0.7 581,209 - MPMX19_05847 0.44 -1.9 581,209 - MPMX19_05847 0.44 -0.1 581,209 - MPMX19_05847 0.44 -1.2 581,209 - MPMX19_05847 0.44 -0.3 581,209 - MPMX19_05847 0.44 -1.7 581,209 - MPMX19_05847 0.44 -0.1 581,209 - MPMX19_05847 0.44 -0.8 581,209 - MPMX19_05847 0.44 -0.6 581,209 - MPMX19_05847 0.44 -0.7 581,209 - MPMX19_05847 0.44 -0.3 581,209 - MPMX19_05847 0.44 -1.1 581,209 - MPMX19_05847 0.44 -0.9 581,209 - MPMX19_05847 0.44 -0.4 581,209 - MPMX19_05847 0.44 -1.1 581,209 - MPMX19_05847 0.44 -0.3 581,209 - MPMX19_05847 0.44 -0.2 581,209 - MPMX19_05847 0.44 +0.1 581,209 - MPMX19_05847 0.44 +1.1 581,209 - MPMX19_05847 0.44 -0.7 581,209 - MPMX19_05847 0.44 -1.2 581,209 - MPMX19_05847 0.44 -0.4 581,209 - MPMX19_05847 0.44 -1.2 581,209 - MPMX19_05847 0.44 -0.2 581,209 - MPMX19_05847 0.44 -1.4 581,209 - MPMX19_05847 0.44 -0.0 581,209 - MPMX19_05847 0.44 -2.6 581,209 - MPMX19_05847 0.44 +0.4 581,209 - MPMX19_05847 0.44 +0.2 581,209 - MPMX19_05847 0.44 -0.8 581,209 - MPMX19_05847 0.44 +0.4 581,209 - MPMX19_05847 0.44 -0.6 581,209 - MPMX19_05847 0.44 -0.9 581,544 + MPMX19_05847 0.73 +0.1 581,545 - MPMX19_05847 0.73 +0.1 581,545 - MPMX19_05847 0.73 -1.0 581,545 - MPMX19_05847 0.73 -1.4 581,574 + MPMX19_05847 0.76 -0.2 581,574 + MPMX19_05847 0.76 +0.9 581,574 + MPMX19_05847 0.76 -0.0 581,574 + MPMX19_05847 0.76 +0.1 581,575 - MPMX19_05847 0.76 -0.2 581,575 - MPMX19_05847 0.76 +0.4 581,575 - MPMX19_05847 0.76 +0.2 581,575 - MPMX19_05847 0.76 +0.4 581,575 - MPMX19_05847 0.76 -3.1 581,575 - MPMX19_05847 0.76 -1.3 581,575 - MPMX19_05847 0.76 +0.2 581,694 + MPMX19_05847 0.86 -1.0 581,694 + MPMX19_05847 0.86 -1.8 581,694 + MPMX19_05847 0.86 -2.2 581,695 - MPMX19_05847 0.86 -0.6 581,695 - MPMX19_05847 0.86 -1.2 581,695 - MPMX19_05847 0.86 -0.9 581,695 - MPMX19_05847 0.86 -0.3 581,695 - MPMX19_05847 0.86 -1.7 581,695 - MPMX19_05847 0.86 -1.2 581,695 - MPMX19_05847 0.86 +0.2 581,695 - MPMX19_05847 0.86 -0.1 581,748 + -0.0 581,748 + +0.0 581,749 - -2.8 581,749 - -0.8 581,749 - -0.0 581,749 - -0.4 581,749 - +0.5 581,763 + -0.0 581,763 + -1.4 581,763 + +0.3 581,763 + +0.4 581,763 + +1.3 581,763 + -0.3 581,763 + -0.9 581,764 - -0.8 581,764 - +0.1 581,764 - -1.0 581,764 - -1.3 581,764 - +0.3 581,764 - -0.3 581,764 - -1.2 581,764 - -0.8 581,764 - -2.1 581,764 - -0.6 581,764 - +0.4 581,764 - -1.3 581,764 - +0.4 581,764 - +0.1 581,764 - -0.0 581,764 - -1.1 581,814 + -0.6 581,815 - -0.6 581,847 + +0.1 581,847 + -0.0 581,847 + -0.1 581,847 + +0.7 581,847 + -1.0 581,848 - -2.0 581,848 - +0.6 581,848 - -0.1 581,848 - +0.4 581,927 + +1.8 581,928 - -0.5 581,936 + +0.5 581,936 + -0.0 581,936 + +0.5 581,936 + -0.2 581,937 - -0.5 581,937 - -1.2 581,937 - -1.0 581,937 - +0.8 581,937 - -0.6 581,937 - +1.9 581,937 - -2.2 582,254 + MPMX19_05848 0.50 +0.6 582,254 + MPMX19_05848 0.50 +0.5 582,254 + MPMX19_05848 0.50 +0.3 582,254 + MPMX19_05848 0.50 +0.3 582,254 + MPMX19_05848 0.50 -1.8 582,254 + MPMX19_05848 0.50 -1.2 582,255 - MPMX19_05848 0.50 -0.3 582,255 - MPMX19_05848 0.50 +0.6 582,255 - MPMX19_05848 0.50 -1.1 582,255 - MPMX19_05848 0.50 +0.2 582,255 - MPMX19_05848 0.50 -0.4 582,255 - MPMX19_05848 0.50 -0.6 582,255 - MPMX19_05848 0.50 -0.8 582,255 - MPMX19_05848 0.50 -0.7 582,255 - MPMX19_05848 0.50 -0.8 582,255 - MPMX19_05848 0.50 -1.2 582,255 - MPMX19_05848 0.50 -1.5 582,511 + MPMX19_05848 0.85 -1.0 582,511 + MPMX19_05848 0.85 -1.0 582,511 + MPMX19_05848 0.85 -0.3 582,512 - MPMX19_05848 0.85 -0.3 582,512 - MPMX19_05848 0.85 -0.0 582,512 - MPMX19_05848 0.85 -0.6 582,512 - MPMX19_05848 0.85 -0.9 582,512 - MPMX19_05848 0.85 +0.1 582,630 + -1.0 582,630 + -0.9 582,630 + -0.0 582,630 + +0.1 582,631 - -1.6 582,631 - -1.3 582,631 - -0.9 582,631 - -1.0 582,631 - -1.3 582,631 - -0.1 582,721 + +1.6 582,721 + -0.6 582,721 + +0.1 582,721 + +0.0 582,722 - -1.2 582,722 - -1.1 582,722 - -0.5 582,722 - -0.7 582,955 + MPMX19_05849 0.42 +0.7 582,955 + MPMX19_05849 0.42 +1.2 582,956 - MPMX19_05849 0.42 -0.5 582,956 - MPMX19_05849 0.42 -0.8 582,956 - MPMX19_05849 0.42 -0.0 582,956 - MPMX19_05849 0.42 +0.4 582,956 - MPMX19_05849 0.42 -0.3 583,195 + MPMX19_05849 0.75 -0.4 583,196 - MPMX19_05849 0.76 +0.5 583,196 - MPMX19_05849 0.76 -0.5 583,196 - MPMX19_05849 0.76 -0.0 583,333 + -0.0 583,333 + -1.5 583,333 + -2.3 583,333 + -0.8 583,333 + +0.3 583,333 + -0.9 583,334 - -0.4 583,334 - -0.2 583,334 - -1.2 583,334 - -0.3 583,490 - +0.0 583,490 - -0.8 583,490 - +0.2 583,490 - -1.4 583,490 - -1.2 583,490 - +0.6 583,490 - -0.5 583,490 - -0.8 583,490 - +1.7 583,490 - -0.3 583,490 - -0.4 583,490 - +0.9 583,490 - +0.6 583,490 - -0.4 583,490 - -1.4 583,490 - +0.7 583,490 - -0.4 583,535 + +0.4 583,535 + -1.1 583,535 + +1.6 583,537 + -0.8 583,537 + -0.4 583,537 + -0.3 583,537 + -0.4 583,537 + -0.8 583,537 + -0.9 583,537 + +1.0 583,537 + +0.3 583,537 + -0.1 583,537 + -0.5 583,537 + -0.8
Or see this region's nucleotide sequence