Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02933 and MPMX19_02934 are separated by 100 nucleotides MPMX19_02934 and MPMX19_02935 are separated by 7 nucleotides MPMX19_02935 and MPMX19_02936 are separated by 9 nucleotides MPMX19_02936 and MPMX19_02937 are separated by 66 nucleotides
MPMX19_02933: MPMX19_02933 - Methanol dehydrogenase [cytochrome c] subunit 1, at 187,927 to 189,762
_02933
MPMX19_02934: MPMX19_02934 - hypothetical protein, at 189,863 to 190,465
_02934
MPMX19_02935: MPMX19_02935 - hypothetical protein, at 190,473 to 191,816
_02935
MPMX19_02936: MPMX19_02936 - hypothetical protein, at 191,826 to 192,464
_02936
MPMX19_02937: MPMX19_02937 - hypothetical protein, at 192,531 to 193,034
_02937
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 189.473 kb on - strand, within MPMX19_02933 at 189.490 kb on + strand, within MPMX19_02933 at 189.490 kb on + strand, within MPMX19_02933 at 189.490 kb on + strand, within MPMX19_02933 at 189.491 kb on - strand, within MPMX19_02933 at 189.491 kb on - strand, within MPMX19_02933 at 189.491 kb on - strand, within MPMX19_02933 at 189.529 kb on + strand, within MPMX19_02933 at 189.529 kb on + strand, within MPMX19_02933 at 189.529 kb on + strand, within MPMX19_02933 at 189.529 kb on + strand, within MPMX19_02933 at 189.529 kb on + strand, within MPMX19_02933 at 189.530 kb on - strand, within MPMX19_02933 at 189.530 kb on - strand, within MPMX19_02933 at 189.530 kb on - strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.574 kb on + strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.575 kb on - strand, within MPMX19_02933 at 189.595 kb on + strand at 189.595 kb on + strand at 189.595 kb on + strand at 189.595 kb on + strand at 189.595 kb on + strand at 189.595 kb on + strand at 189.595 kb on + strand at 189.595 kb on + strand at 189.595 kb on + strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.596 kb on - strand at 189.709 kb on + strand at 189.709 kb on + strand at 189.709 kb on + strand at 189.709 kb on + strand at 189.710 kb on - strand at 189.710 kb on - strand at 189.760 kb on + strand at 189.809 kb on + strand at 189.809 kb on + strand at 189.831 kb on + strand at 189.832 kb on - strand at 189.832 kb on - strand at 189.872 kb on + strand at 189.873 kb on - strand at 189.873 kb on - strand at 189.873 kb on - strand at 189.873 kb on - strand at 189.873 kb on - strand at 190.166 kb on + strand, within MPMX19_02934 at 190.166 kb on + strand, within MPMX19_02934 at 190.166 kb on + strand, within MPMX19_02934 at 190.166 kb on + strand, within MPMX19_02934 at 190.166 kb on + strand, within MPMX19_02934 at 190.167 kb on - strand, within MPMX19_02934 at 190.167 kb on - strand, within MPMX19_02934 at 190.167 kb on - strand, within MPMX19_02934 at 190.184 kb on + strand, within MPMX19_02934 at 190.185 kb on - strand, within MPMX19_02934 at 190.270 kb on - strand, within MPMX19_02934 at 190.274 kb on + strand, within MPMX19_02934 at 190.274 kb on + strand, within MPMX19_02934 at 190.274 kb on + strand, within MPMX19_02934 at 190.274 kb on + strand, within MPMX19_02934 at 190.274 kb on + strand, within MPMX19_02934 at 190.274 kb on + strand, within MPMX19_02934 at 190.274 kb on + strand, within MPMX19_02934 at 190.274 kb on + strand, within MPMX19_02934 at 190.275 kb on - strand, within MPMX19_02934 at 190.275 kb on - strand, within MPMX19_02934 at 190.275 kb on - strand, within MPMX19_02934 at 190.275 kb on - strand, within MPMX19_02934 at 190.275 kb on - strand, within MPMX19_02934 at 190.275 kb on - strand, within MPMX19_02934 at 190.275 kb on - strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.391 kb on + strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.392 kb on - strand, within MPMX19_02934 at 190.420 kb on + strand at 190.421 kb on - strand at 190.421 kb on - strand at 190.421 kb on - strand at 190.421 kb on - strand at 190.815 kb on + strand, within MPMX19_02935 at 190.815 kb on + strand, within MPMX19_02935 at 190.815 kb on + strand, within MPMX19_02935 at 190.816 kb on - strand, within MPMX19_02935 at 190.816 kb on - strand, within MPMX19_02935 at 190.816 kb on - strand, within MPMX19_02935 at 190.816 kb on - strand, within MPMX19_02935 at 190.830 kb on + strand, within MPMX19_02935 at 190.830 kb on + strand, within MPMX19_02935 at 190.830 kb on + strand, within MPMX19_02935 at 190.830 kb on + strand, within MPMX19_02935 at 190.830 kb on + strand, within MPMX19_02935 at 190.830 kb on + strand, within MPMX19_02935 at 190.830 kb on + strand, within MPMX19_02935 at 190.831 kb on - strand, within MPMX19_02935 at 190.831 kb on - strand, within MPMX19_02935 at 190.831 kb on - strand, within MPMX19_02935 at 190.831 kb on - strand, within MPMX19_02935 at 190.831 kb on - strand, within MPMX19_02935 at 190.842 kb on + strand, within MPMX19_02935 at 190.843 kb on - strand, within MPMX19_02935 at 190.843 kb on - strand, within MPMX19_02935 at 190.843 kb on - strand, within MPMX19_02935 at 190.974 kb on + strand, within MPMX19_02935 at 190.974 kb on + strand, within MPMX19_02935 at 190.975 kb on - strand, within MPMX19_02935 at 191.157 kb on + strand, within MPMX19_02935 at 191.157 kb on + strand, within MPMX19_02935 at 191.157 kb on + strand, within MPMX19_02935 at 191.157 kb on + strand, within MPMX19_02935 at 191.158 kb on - strand, within MPMX19_02935 at 191.158 kb on - strand, within MPMX19_02935 at 191.158 kb on - strand, within MPMX19_02935 at 191.158 kb on - strand, within MPMX19_02935 at 191.158 kb on - strand, within MPMX19_02935 at 191.158 kb on - strand, within MPMX19_02935 at 191.158 kb on - strand, within MPMX19_02935 at 191.158 kb on - strand, within MPMX19_02935 at 191.262 kb on + strand, within MPMX19_02935 at 191.262 kb on + strand, within MPMX19_02935 at 191.262 kb on + strand, within MPMX19_02935 at 191.263 kb on - strand, within MPMX19_02935 at 191.263 kb on - strand, within MPMX19_02935 at 191.263 kb on - strand, within MPMX19_02935 at 191.571 kb on + strand, within MPMX19_02935 at 191.571 kb on + strand, within MPMX19_02935 at 191.571 kb on + strand, within MPMX19_02935 at 191.587 kb on + strand, within MPMX19_02935 at 191.588 kb on - strand, within MPMX19_02935 at 192.215 kb on + strand, within MPMX19_02936 at 192.215 kb on + strand, within MPMX19_02936 at 192.216 kb on - strand, within MPMX19_02936 at 192.455 kb on - strand at 192.729 kb on + strand, within MPMX19_02937 at 192.729 kb on + strand, within MPMX19_02937 at 192.729 kb on + strand, within MPMX19_02937 at 192.730 kb on - strand, within MPMX19_02937 at 192.730 kb on - strand, within MPMX19_02937
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 189,473 - MPMX19_02933 0.84 -0.3 189,490 + MPMX19_02933 0.85 -1.1 189,490 + MPMX19_02933 0.85 -0.5 189,490 + MPMX19_02933 0.85 -0.2 189,491 - MPMX19_02933 0.85 -0.9 189,491 - MPMX19_02933 0.85 +0.1 189,491 - MPMX19_02933 0.85 -2.0 189,529 + MPMX19_02933 0.87 +0.2 189,529 + MPMX19_02933 0.87 -0.8 189,529 + MPMX19_02933 0.87 -1.4 189,529 + MPMX19_02933 0.87 +0.6 189,529 + MPMX19_02933 0.87 -0.5 189,530 - MPMX19_02933 0.87 -0.3 189,530 - MPMX19_02933 0.87 -0.2 189,530 - MPMX19_02933 0.87 -0.4 189,574 + MPMX19_02933 0.90 -0.0 189,574 + MPMX19_02933 0.90 +0.3 189,574 + MPMX19_02933 0.90 -1.3 189,574 + MPMX19_02933 0.90 -0.7 189,574 + MPMX19_02933 0.90 -0.6 189,574 + MPMX19_02933 0.90 -0.2 189,574 + MPMX19_02933 0.90 -1.0 189,574 + MPMX19_02933 0.90 -0.2 189,574 + MPMX19_02933 0.90 +0.7 189,574 + MPMX19_02933 0.90 -0.0 189,574 + MPMX19_02933 0.90 -0.0 189,574 + MPMX19_02933 0.90 +0.6 189,574 + MPMX19_02933 0.90 -0.0 189,574 + MPMX19_02933 0.90 -0.4 189,575 - MPMX19_02933 0.90 -0.9 189,575 - MPMX19_02933 0.90 -0.7 189,575 - MPMX19_02933 0.90 -0.2 189,575 - MPMX19_02933 0.90 -0.8 189,575 - MPMX19_02933 0.90 +0.0 189,575 - MPMX19_02933 0.90 -1.2 189,575 - MPMX19_02933 0.90 -0.7 189,575 - MPMX19_02933 0.90 -0.3 189,575 - MPMX19_02933 0.90 -1.4 189,595 + +1.5 189,595 + -0.7 189,595 + -0.7 189,595 + -1.9 189,595 + -0.9 189,595 + +0.3 189,595 + -0.1 189,595 + -1.6 189,595 + -0.7 189,596 - -0.4 189,596 - -1.4 189,596 - -1.2 189,596 - -0.8 189,596 - +1.2 189,596 - +0.6 189,596 - -0.6 189,596 - -0.0 189,596 - -0.1 189,596 - -2.1 189,596 - -1.4 189,596 - +0.6 189,596 - -1.0 189,709 + -1.2 189,709 + +0.6 189,709 + -0.2 189,709 + +0.6 189,710 - -0.0 189,710 - -0.4 189,760 + -0.2 189,809 + -0.2 189,809 + +0.2 189,831 + -0.3 189,832 - -0.4 189,832 - -0.4 189,872 + -1.4 189,873 - +0.1 189,873 - -0.9 189,873 - -0.0 189,873 - -1.3 189,873 - -0.5 190,166 + MPMX19_02934 0.50 -1.9 190,166 + MPMX19_02934 0.50 -1.4 190,166 + MPMX19_02934 0.50 +0.2 190,166 + MPMX19_02934 0.50 -0.0 190,166 + MPMX19_02934 0.50 -1.1 190,167 - MPMX19_02934 0.50 -2.1 190,167 - MPMX19_02934 0.50 -0.0 190,167 - MPMX19_02934 0.50 -0.3 190,184 + MPMX19_02934 0.53 -1.4 190,185 - MPMX19_02934 0.53 -0.2 190,270 - MPMX19_02934 0.67 -0.0 190,274 + MPMX19_02934 0.68 +0.1 190,274 + MPMX19_02934 0.68 -2.0 190,274 + MPMX19_02934 0.68 -1.4 190,274 + MPMX19_02934 0.68 +0.1 190,274 + MPMX19_02934 0.68 -2.1 190,274 + MPMX19_02934 0.68 -0.2 190,274 + MPMX19_02934 0.68 -0.8 190,274 + MPMX19_02934 0.68 -1.3 190,275 - MPMX19_02934 0.68 +0.6 190,275 - MPMX19_02934 0.68 -0.5 190,275 - MPMX19_02934 0.68 -1.4 190,275 - MPMX19_02934 0.68 +0.9 190,275 - MPMX19_02934 0.68 -0.9 190,275 - MPMX19_02934 0.68 -0.4 190,275 - MPMX19_02934 0.68 +0.3 190,391 + MPMX19_02934 0.88 -0.4 190,391 + MPMX19_02934 0.88 -1.9 190,391 + MPMX19_02934 0.88 -0.8 190,391 + MPMX19_02934 0.88 -0.6 190,391 + MPMX19_02934 0.88 -1.9 190,391 + MPMX19_02934 0.88 -2.1 190,391 + MPMX19_02934 0.88 -0.6 190,391 + MPMX19_02934 0.88 +0.1 190,391 + MPMX19_02934 0.88 +1.9 190,391 + MPMX19_02934 0.88 -0.8 190,392 - MPMX19_02934 0.88 +0.7 190,392 - MPMX19_02934 0.88 -0.3 190,392 - MPMX19_02934 0.88 -0.4 190,392 - MPMX19_02934 0.88 +0.4 190,392 - MPMX19_02934 0.88 -0.0 190,392 - MPMX19_02934 0.88 -3.0 190,392 - MPMX19_02934 0.88 +1.2 190,392 - MPMX19_02934 0.88 -0.8 190,392 - MPMX19_02934 0.88 -1.5 190,392 - MPMX19_02934 0.88 -0.3 190,392 - MPMX19_02934 0.88 +0.3 190,420 + -0.9 190,421 - -0.7 190,421 - +0.2 190,421 - +0.1 190,421 - -0.0 190,815 + MPMX19_02935 0.25 -0.8 190,815 + MPMX19_02935 0.25 +0.4 190,815 + MPMX19_02935 0.25 +0.2 190,816 - MPMX19_02935 0.26 -2.1 190,816 - MPMX19_02935 0.26 +0.3 190,816 - MPMX19_02935 0.26 +0.6 190,816 - MPMX19_02935 0.26 +0.1 190,830 + MPMX19_02935 0.27 +0.2 190,830 + MPMX19_02935 0.27 -0.8 190,830 + MPMX19_02935 0.27 -0.8 190,830 + MPMX19_02935 0.27 -0.6 190,830 + MPMX19_02935 0.27 -0.8 190,830 + MPMX19_02935 0.27 +0.4 190,830 + MPMX19_02935 0.27 -0.3 190,831 - MPMX19_02935 0.27 +0.2 190,831 - MPMX19_02935 0.27 -1.8 190,831 - MPMX19_02935 0.27 -0.0 190,831 - MPMX19_02935 0.27 -1.2 190,831 - MPMX19_02935 0.27 -0.2 190,842 + MPMX19_02935 0.27 -2.3 190,843 - MPMX19_02935 0.28 -1.3 190,843 - MPMX19_02935 0.28 -0.7 190,843 - MPMX19_02935 0.28 -0.2 190,974 + MPMX19_02935 0.37 +1.0 190,974 + MPMX19_02935 0.37 +0.6 190,975 - MPMX19_02935 0.37 -1.1 191,157 + MPMX19_02935 0.51 -0.8 191,157 + MPMX19_02935 0.51 -1.9 191,157 + MPMX19_02935 0.51 -0.5 191,157 + MPMX19_02935 0.51 -1.4 191,158 - MPMX19_02935 0.51 -1.8 191,158 - MPMX19_02935 0.51 -0.2 191,158 - MPMX19_02935 0.51 -0.8 191,158 - MPMX19_02935 0.51 +1.3 191,158 - MPMX19_02935 0.51 -1.4 191,158 - MPMX19_02935 0.51 -1.1 191,158 - MPMX19_02935 0.51 -0.9 191,158 - MPMX19_02935 0.51 -0.3 191,262 + MPMX19_02935 0.59 -1.3 191,262 + MPMX19_02935 0.59 -2.7 191,262 + MPMX19_02935 0.59 +0.1 191,263 - MPMX19_02935 0.59 +2.4 191,263 - MPMX19_02935 0.59 -0.2 191,263 - MPMX19_02935 0.59 -0.7 191,571 + MPMX19_02935 0.82 -1.0 191,571 + MPMX19_02935 0.82 +1.0 191,571 + MPMX19_02935 0.82 -0.5 191,587 + MPMX19_02935 0.83 -0.0 191,588 - MPMX19_02935 0.83 +0.2 192,215 + MPMX19_02936 0.61 +3.6 192,215 + MPMX19_02936 0.61 -2.0 192,216 - MPMX19_02936 0.61 -1.4 192,455 - -1.4 192,729 + MPMX19_02937 0.39 -1.6 192,729 + MPMX19_02937 0.39 +0.3 192,729 + MPMX19_02937 0.39 -0.6 192,730 - MPMX19_02937 0.39 -0.1 192,730 - MPMX19_02937 0.39 +1.3
Or see this region's nucleotide sequence