Experiment: monoculture; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00878 and MIT1002_00879 are separated by 96 nucleotides MIT1002_00879 and MIT1002_00880 are separated by 134 nucleotides MIT1002_00880 and MIT1002_00881 are separated by 86 nucleotides
MIT1002_00878: MIT1002_00878 - Sulfate permease CysP, at 970,753 to 972,024
_00878
MIT1002_00879: MIT1002_00879 - Universal stress protein E, at 972,121 to 973,098
_00879
MIT1002_00880: MIT1002_00880 - hypothetical protein, at 973,233 to 973,346
_00880
MIT1002_00881: MIT1002_00881 - Morphology and auto-aggregation control protein, at 973,433 to 974,341
_00881
Position (kb) 972
973
974 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 972.019 kb on + strand at 972.019 kb on + strand at 972.029 kb on - strand at 972.050 kb on - strand at 972.140 kb on - strand at 972.154 kb on + strand at 972.164 kb on - strand at 972.176 kb on + strand at 972.184 kb on - strand at 972.208 kb on + strand at 972.212 kb on + strand at 972.217 kb on + strand at 972.231 kb on + strand, within MIT1002_00879 at 972.231 kb on + strand, within MIT1002_00879 at 972.232 kb on + strand, within MIT1002_00879 at 972.248 kb on + strand, within MIT1002_00879 at 972.346 kb on + strand, within MIT1002_00879 at 972.354 kb on - strand, within MIT1002_00879 at 972.456 kb on - strand, within MIT1002_00879 at 972.470 kb on - strand, within MIT1002_00879 at 972.515 kb on + strand, within MIT1002_00879 at 972.515 kb on + strand, within MIT1002_00879 at 972.517 kb on + strand, within MIT1002_00879 at 972.523 kb on - strand, within MIT1002_00879 at 972.523 kb on - strand, within MIT1002_00879 at 972.530 kb on - strand, within MIT1002_00879 at 972.597 kb on - strand, within MIT1002_00879 at 972.627 kb on - strand, within MIT1002_00879 at 972.664 kb on - strand, within MIT1002_00879 at 972.722 kb on - strand, within MIT1002_00879 at 972.722 kb on - strand, within MIT1002_00879 at 972.745 kb on + strand, within MIT1002_00879 at 972.745 kb on + strand, within MIT1002_00879 at 972.750 kb on + strand, within MIT1002_00879 at 972.819 kb on + strand, within MIT1002_00879 at 972.840 kb on + strand, within MIT1002_00879 at 972.848 kb on - strand, within MIT1002_00879 at 972.894 kb on - strand, within MIT1002_00879 at 972.894 kb on - strand, within MIT1002_00879 at 973.023 kb on + strand at 973.025 kb on + strand at 973.033 kb on - strand at 973.060 kb on + strand at 973.068 kb on - strand at 973.136 kb on + strand at 973.441 kb on + strand at 973.448 kb on - strand at 973.448 kb on - strand at 973.500 kb on + strand at 973.500 kb on + strand at 973.513 kb on - strand at 973.518 kb on - strand at 973.545 kb on - strand, within MIT1002_00881 at 973.547 kb on + strand, within MIT1002_00881 at 973.595 kb on + strand, within MIT1002_00881 at 973.595 kb on + strand, within MIT1002_00881 at 973.595 kb on + strand, within MIT1002_00881 at 973.664 kb on + strand, within MIT1002_00881 at 973.683 kb on - strand, within MIT1002_00881 at 973.697 kb on + strand, within MIT1002_00881 at 973.716 kb on + strand, within MIT1002_00881 at 973.868 kb on - strand, within MIT1002_00881 at 973.868 kb on - strand, within MIT1002_00881 at 973.910 kb on - strand, within MIT1002_00881 at 973.918 kb on - strand, within MIT1002_00881 at 973.928 kb on + strand, within MIT1002_00881 at 973.931 kb on - strand, within MIT1002_00881 at 973.936 kb on - strand, within MIT1002_00881 at 973.961 kb on + strand, within MIT1002_00881 at 973.972 kb on + strand, within MIT1002_00881 at 973.972 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.037 kb on + strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.069 kb on + strand, within MIT1002_00881 at 974.075 kb on - strand, within MIT1002_00881
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4 remove 972,019 + +1.0 972,019 + +1.3 972,029 - +0.6 972,050 - +0.3 972,140 - -0.6 972,154 + -0.5 972,164 - -2.0 972,176 + -0.5 972,184 - -2.2 972,208 + -1.2 972,212 + -0.3 972,217 + +0.2 972,231 + MIT1002_00879 0.11 -3.9 972,231 + MIT1002_00879 0.11 -2.3 972,232 + MIT1002_00879 0.11 -2.6 972,248 + MIT1002_00879 0.13 -1.2 972,346 + MIT1002_00879 0.23 -2.8 972,354 - MIT1002_00879 0.24 -0.7 972,456 - MIT1002_00879 0.34 -2.4 972,470 - MIT1002_00879 0.36 -1.2 972,515 + MIT1002_00879 0.40 -2.7 972,515 + MIT1002_00879 0.40 -1.7 972,517 + MIT1002_00879 0.40 -3.2 972,523 - MIT1002_00879 0.41 -2.5 972,523 - MIT1002_00879 0.41 -2.7 972,530 - MIT1002_00879 0.42 -1.9 972,597 - MIT1002_00879 0.49 -0.8 972,627 - MIT1002_00879 0.52 -2.1 972,664 - MIT1002_00879 0.56 -0.4 972,722 - MIT1002_00879 0.61 -2.2 972,722 - MIT1002_00879 0.61 -3.7 972,745 + MIT1002_00879 0.64 -1.8 972,745 + MIT1002_00879 0.64 -1.6 972,750 + MIT1002_00879 0.64 -1.6 972,819 + MIT1002_00879 0.71 -2.4 972,840 + MIT1002_00879 0.74 -1.3 972,848 - MIT1002_00879 0.74 -3.8 972,894 - MIT1002_00879 0.79 -0.9 972,894 - MIT1002_00879 0.79 -2.6 973,023 + -3.9 973,025 + -0.9 973,033 - -2.7 973,060 + -2.7 973,068 - -1.6 973,136 + +0.2 973,441 + +0.8 973,448 - -1.3 973,448 - +0.0 973,500 + +1.4 973,500 + +0.7 973,513 - +0.8 973,518 - +1.4 973,545 - MIT1002_00881 0.12 +1.0 973,547 + MIT1002_00881 0.13 +1.3 973,595 + MIT1002_00881 0.18 -0.4 973,595 + MIT1002_00881 0.18 +0.4 973,595 + MIT1002_00881 0.18 -0.3 973,664 + MIT1002_00881 0.25 -2.2 973,683 - MIT1002_00881 0.28 -1.1 973,697 + MIT1002_00881 0.29 +0.5 973,716 + MIT1002_00881 0.31 +0.5 973,868 - MIT1002_00881 0.48 -0.1 973,868 - MIT1002_00881 0.48 +0.5 973,910 - MIT1002_00881 0.52 +0.0 973,918 - MIT1002_00881 0.53 +1.7 973,928 + MIT1002_00881 0.54 +0.9 973,931 - MIT1002_00881 0.55 +0.2 973,936 - MIT1002_00881 0.55 +0.4 973,961 + MIT1002_00881 0.58 +0.8 973,972 + MIT1002_00881 0.59 -1.2 973,972 + MIT1002_00881 0.59 -1.6 974,035 + MIT1002_00881 0.66 -1.2 974,035 + MIT1002_00881 0.66 -0.5 974,035 + MIT1002_00881 0.66 +2.9 974,035 + MIT1002_00881 0.66 -1.8 974,037 + MIT1002_00881 0.66 +0.1 974,043 - MIT1002_00881 0.67 +0.8 974,043 - MIT1002_00881 0.67 +0.3 974,043 - MIT1002_00881 0.67 -1.6 974,043 - MIT1002_00881 0.67 +2.3 974,069 + MIT1002_00881 0.70 -0.0 974,075 - MIT1002_00881 0.71 +0.2
Or see this region's nucleotide sequence