Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06938

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06937 and MPMX19_06938 are separated by 132 nucleotidesMPMX19_06938 and MPMX19_06939 overlap by 8 nucleotides MPMX19_06937: MPMX19_06937 - hypothetical protein, at 209,535 to 210,818 _06937 MPMX19_06938: MPMX19_06938 - Short-chain-enoyl-CoA hydratase, at 210,951 to 211,766 _06938 MPMX19_06939: MPMX19_06939 - S-(hydroxymethyl)glutathione dehydrogenase, at 211,759 to 212,889 _06939 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 210.133 kb on + strand, within MPMX19_06937at 210.133 kb on + strand, within MPMX19_06937at 210.133 kb on + strand, within MPMX19_06937at 210.134 kb on - strand, within MPMX19_06937at 210.134 kb on - strand, within MPMX19_06937at 210.134 kb on - strand, within MPMX19_06937at 210.245 kb on - strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.262 kb on + strand, within MPMX19_06937at 210.263 kb on - strand, within MPMX19_06937at 210.263 kb on - strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.319 kb on + strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.320 kb on - strand, within MPMX19_06937at 210.328 kb on + strand, within MPMX19_06937at 210.328 kb on + strand, within MPMX19_06937at 210.328 kb on + strand, within MPMX19_06937at 210.328 kb on + strand, within MPMX19_06937at 210.329 kb on - strand, within MPMX19_06937at 210.493 kb on + strand, within MPMX19_06937at 210.493 kb on + strand, within MPMX19_06937at 210.493 kb on + strand, within MPMX19_06937at 210.494 kb on - strand, within MPMX19_06937at 210.939 kb on + strandat 210.939 kb on + strandat 210.940 kb on - strandat 211.886 kb on + strand, within MPMX19_06939at 211.886 kb on + strand, within MPMX19_06939at 211.886 kb on + strand, within MPMX19_06939at 211.887 kb on - strand, within MPMX19_06939at 211.887 kb on - strand, within MPMX19_06939at 211.899 kb on - strand, within MPMX19_06939at 211.899 kb on - strand, within MPMX19_06939at 212.450 kb on + strand, within MPMX19_06939at 212.450 kb on + strand, within MPMX19_06939at 212.451 kb on - strand, within MPMX19_06939at 212.594 kb on + strand, within MPMX19_06939at 212.594 kb on + strand, within MPMX19_06939at 212.595 kb on - strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.597 kb on + strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.598 kb on - strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.618 kb on + strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939at 212.619 kb on - strand, within MPMX19_06939

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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210,133 + MPMX19_06937 0.47 -0.0
210,133 + MPMX19_06937 0.47 -1.0
210,133 + MPMX19_06937 0.47 -0.5
210,134 - MPMX19_06937 0.47 -1.7
210,134 - MPMX19_06937 0.47 -0.0
210,134 - MPMX19_06937 0.47 -2.1
210,245 - MPMX19_06937 0.55 -0.5
210,262 + MPMX19_06937 0.57 -1.8
210,262 + MPMX19_06937 0.57 -0.6
210,262 + MPMX19_06937 0.57 -1.2
210,262 + MPMX19_06937 0.57 -1.9
210,262 + MPMX19_06937 0.57 -0.7
210,262 + MPMX19_06937 0.57 +0.1
210,263 - MPMX19_06937 0.57 -1.3
210,263 - MPMX19_06937 0.57 -0.6
210,319 + MPMX19_06937 0.61 -0.9
210,319 + MPMX19_06937 0.61 -1.7
210,319 + MPMX19_06937 0.61 -1.2
210,319 + MPMX19_06937 0.61 -0.4
210,319 + MPMX19_06937 0.61 -0.7
210,319 + MPMX19_06937 0.61 -1.2
210,319 + MPMX19_06937 0.61 -0.6
210,320 - MPMX19_06937 0.61 -0.2
210,320 - MPMX19_06937 0.61 +0.1
210,320 - MPMX19_06937 0.61 -1.7
210,320 - MPMX19_06937 0.61 -0.1
210,320 - MPMX19_06937 0.61 -1.0
210,320 - MPMX19_06937 0.61 -0.4
210,320 - MPMX19_06937 0.61 -0.1
210,320 - MPMX19_06937 0.61 -1.3
210,328 + MPMX19_06937 0.62 -1.8
210,328 + MPMX19_06937 0.62 +1.7
210,328 + MPMX19_06937 0.62 +1.2
210,328 + MPMX19_06937 0.62 +0.5
210,329 - MPMX19_06937 0.62 -1.3
210,493 + MPMX19_06937 0.75 +0.5
210,493 + MPMX19_06937 0.75 +1.2
210,493 + MPMX19_06937 0.75 +1.0
210,494 - MPMX19_06937 0.75 +0.0
210,939 + +0.7
210,939 + +1.5
210,940 - -0.8
211,886 + MPMX19_06939 0.11 -0.8
211,886 + MPMX19_06939 0.11 -1.6
211,886 + MPMX19_06939 0.11 -0.0
211,887 - MPMX19_06939 0.11 -0.8
211,887 - MPMX19_06939 0.11 -1.9
211,899 - MPMX19_06939 0.12 -0.9
211,899 - MPMX19_06939 0.12 -0.5
212,450 + MPMX19_06939 0.61 -0.8
212,450 + MPMX19_06939 0.61 +1.3
212,451 - MPMX19_06939 0.61 +0.5
212,594 + MPMX19_06939 0.74 -2.4
212,594 + MPMX19_06939 0.74 +1.8
212,595 - MPMX19_06939 0.74 -1.9
212,597 + MPMX19_06939 0.74 -2.1
212,597 + MPMX19_06939 0.74 -1.2
212,597 + MPMX19_06939 0.74 +1.0
212,597 + MPMX19_06939 0.74 -0.5
212,597 + MPMX19_06939 0.74 -0.8
212,597 + MPMX19_06939 0.74 +0.0
212,597 + MPMX19_06939 0.74 +0.2
212,597 + MPMX19_06939 0.74 -1.6
212,597 + MPMX19_06939 0.74 -1.6
212,597 + MPMX19_06939 0.74 -1.4
212,598 - MPMX19_06939 0.74 -0.8
212,598 - MPMX19_06939 0.74 +1.9
212,598 - MPMX19_06939 0.74 +0.4
212,598 - MPMX19_06939 0.74 -0.2
212,598 - MPMX19_06939 0.74 -0.8
212,598 - MPMX19_06939 0.74 -0.3
212,598 - MPMX19_06939 0.74 +0.4
212,598 - MPMX19_06939 0.74 -1.7
212,598 - MPMX19_06939 0.74 -0.5
212,618 + MPMX19_06939 0.76 -0.2
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 +0.0
212,618 + MPMX19_06939 0.76 +0.7
212,618 + MPMX19_06939 0.76 -0.5
212,618 + MPMX19_06939 0.76 -1.2
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 -0.2
212,618 + MPMX19_06939 0.76 +0.3
212,618 + MPMX19_06939 0.76 -0.2
212,618 + MPMX19_06939 0.76 -0.9
212,618 + MPMX19_06939 0.76 -0.5
212,618 + MPMX19_06939 0.76 -0.3
212,618 + MPMX19_06939 0.76 -1.1
212,618 + MPMX19_06939 0.76 -0.9
212,618 + MPMX19_06939 0.76 +0.1
212,618 + MPMX19_06939 0.76 -0.8
212,618 + MPMX19_06939 0.76 -2.2
212,618 + MPMX19_06939 0.76 -2.2
212,618 + MPMX19_06939 0.76 -0.5
212,618 + MPMX19_06939 0.76 -0.2
212,618 + MPMX19_06939 0.76 -1.1
212,618 + MPMX19_06939 0.76 +0.9
212,618 + MPMX19_06939 0.76 +0.1
212,618 + MPMX19_06939 0.76 +1.9
212,618 + MPMX19_06939 0.76 -0.1
212,618 + MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 -1.2
212,619 - MPMX19_06939 0.76 -2.1
212,619 - MPMX19_06939 0.76 -0.6
212,619 - MPMX19_06939 0.76 -0.3
212,619 - MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 +0.9
212,619 - MPMX19_06939 0.76 -0.5
212,619 - MPMX19_06939 0.76 -1.9
212,619 - MPMX19_06939 0.76 -1.6
212,619 - MPMX19_06939 0.76 -1.1
212,619 - MPMX19_06939 0.76 +0.5
212,619 - MPMX19_06939 0.76 -0.4
212,619 - MPMX19_06939 0.76 +1.7
212,619 - MPMX19_06939 0.76 -0.8
212,619 - MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 +0.1
212,619 - MPMX19_06939 0.76 -0.0
212,619 - MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 +0.1
212,619 - MPMX19_06939 0.76 -0.9
212,619 - MPMX19_06939 0.76 +0.2
212,619 - MPMX19_06939 0.76 -1.5
212,619 - MPMX19_06939 0.76 -0.6
212,619 - MPMX19_06939 0.76 -0.3
212,619 - MPMX19_06939 0.76 -1.7
212,619 - MPMX19_06939 0.76 -0.0
212,619 - MPMX19_06939 0.76 +0.7
212,619 - MPMX19_06939 0.76 -0.2
212,619 - MPMX19_06939 0.76 -0.3
212,619 - MPMX19_06939 0.76 -0.1

Or see this region's nucleotide sequence