Strain Fitness in Xanthobacter sp. DMC5 around GFF4743

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4742 and GFF4743 are separated by 4 nucleotidesGFF4743 and GFF4744 are separated by 12 nucleotides GFF4742 - Hexuronate transporter, at 157,398 to 158,669 GFF4742 GFF4743 - hypothetical protein, at 158,674 to 158,871 GFF4743 GFF4744 - Tn3 family transposase TnXax1, at 158,884 to 160,137 GFF4744 Position (kb) 158 159Strain fitness (log2 ratio) -3 -2 -1 0 1at 157.698 kb on + strand, within GFF4742at 157.699 kb on - strand, within GFF4742at 157.699 kb on - strand, within GFF4742at 157.807 kb on - strand, within GFF4742at 157.938 kb on + strand, within GFF4742at 157.938 kb on + strand, within GFF4742at 157.938 kb on + strand, within GFF4742at 157.939 kb on - strand, within GFF4742at 157.939 kb on - strand, within GFF4742at 157.939 kb on - strand, within GFF4742at 158.100 kb on + strand, within GFF4742at 158.124 kb on + strand, within GFF4742at 158.136 kb on + strand, within GFF4742at 158.160 kb on + strand, within GFF4742at 158.160 kb on + strand, within GFF4742at 158.161 kb on - strand, within GFF4742at 158.176 kb on - strand, within GFF4742at 158.176 kb on - strand, within GFF4742at 158.311 kb on - strand, within GFF4742at 158.439 kb on + strand, within GFF4742at 158.440 kb on - strand, within GFF4742at 158.440 kb on - strand, within GFF4742at 158.440 kb on - strand, within GFF4742at 158.799 kb on + strand, within GFF4743at 158.834 kb on + strand, within GFF4743at 158.834 kb on + strand, within GFF4743at 159.153 kb on - strand, within GFF4744at 159.153 kb on - strand, within GFF4744at 159.171 kb on - strand, within GFF4744at 159.171 kb on - strand, within GFF4744at 159.188 kb on + strand, within GFF4744at 159.189 kb on - strand, within GFF4744at 159.189 kb on - strand, within GFF4744at 159.219 kb on - strand, within GFF4744at 159.219 kb on - strand, within GFF4744at 159.219 kb on - strand, within GFF4744at 159.219 kb on - strand, within GFF4744at 159.219 kb on - strand, within GFF4744at 159.377 kb on + strand, within GFF4744at 159.378 kb on - strand, within GFF4744at 159.378 kb on - strand, within GFF4744at 159.506 kb on + strand, within GFF4744at 159.506 kb on + strand, within GFF4744at 159.506 kb on + strand, within GFF4744at 159.507 kb on - strand, within GFF4744at 159.647 kb on + strand, within GFF4744at 159.692 kb on + strand, within GFF4744at 159.692 kb on + strand, within GFF4744at 159.693 kb on - strand, within GFF4744at 159.845 kb on + strand, within GFF4744at 159.845 kb on + strand, within GFF4744at 159.845 kb on + strand, within GFF4744at 159.845 kb on + strand, within GFF4744at 159.846 kb on - strand, within GFF4744at 159.846 kb on - strand, within GFF4744

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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157,698 + GFF4742 0.24 +0.6
157,699 - GFF4742 0.24 +0.7
157,699 - GFF4742 0.24 +0.4
157,807 - GFF4742 0.32 +0.6
157,938 + GFF4742 0.42 -0.1
157,938 + GFF4742 0.42 +0.4
157,938 + GFF4742 0.42 -0.6
157,939 - GFF4742 0.43 -1.1
157,939 - GFF4742 0.43 +1.2
157,939 - GFF4742 0.43 +0.1
158,100 + GFF4742 0.55 +0.1
158,124 + GFF4742 0.57 -0.7
158,136 + GFF4742 0.58 -0.1
158,160 + GFF4742 0.60 +0.3
158,160 + GFF4742 0.60 +0.8
158,161 - GFF4742 0.60 -0.5
158,176 - GFF4742 0.61 +0.2
158,176 - GFF4742 0.61 +0.8
158,311 - GFF4742 0.72 +0.1
158,439 + GFF4742 0.82 -0.3
158,440 - GFF4742 0.82 -0.0
158,440 - GFF4742 0.82 -0.9
158,440 - GFF4742 0.82 -0.5
158,799 + GFF4743 0.63 +1.4
158,834 + GFF4743 0.81 +1.4
158,834 + GFF4743 0.81 +1.4
159,153 - GFF4744 0.21 +0.0
159,153 - GFF4744 0.21 -1.5
159,171 - GFF4744 0.23 -0.2
159,171 - GFF4744 0.23 -0.6
159,188 + GFF4744 0.24 -1.8
159,189 - GFF4744 0.24 -0.3
159,189 - GFF4744 0.24 -1.0
159,219 - GFF4744 0.27 -0.4
159,219 - GFF4744 0.27 -0.3
159,219 - GFF4744 0.27 +1.4
159,219 - GFF4744 0.27 -1.6
159,219 - GFF4744 0.27 -0.4
159,377 + GFF4744 0.39 -0.9
159,378 - GFF4744 0.39 +0.6
159,378 - GFF4744 0.39 +0.7
159,506 + GFF4744 0.50 +0.4
159,506 + GFF4744 0.50 -0.5
159,506 + GFF4744 0.50 +0.2
159,507 - GFF4744 0.50 +0.1
159,647 + GFF4744 0.61 +1.1
159,692 + GFF4744 0.64 -0.5
159,692 + GFF4744 0.64 +0.3
159,693 - GFF4744 0.65 -0.4
159,845 + GFF4744 0.77 -2.9
159,845 + GFF4744 0.77 +1.4
159,845 + GFF4744 0.77 +0.1
159,845 + GFF4744 0.77 +0.7
159,846 - GFF4744 0.77 +0.6
159,846 - GFF4744 0.77 +0.1

Or see this region's nucleotide sequence