Strain Fitness in Xanthobacter sp. DMC5 around GFF2678

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2676 and GFF2677 overlap by 4 nucleotidesGFF2677 and GFF2678 are separated by 5 nucleotidesGFF2678 and GFF2679 are separated by 17 nucleotides GFF2676 - tRNA U34 carboxymethyltransferase, at 359,856 to 360,614 GFF2676 GFF2677 - hypothetical protein, at 360,611 to 361,537 GFF2677 GFF2678 - UDP-glucose 4-epimerase, at 361,543 to 362,589 GFF2678 GFF2679 - hypothetical protein, at 362,607 to 363,698 GFF2679 Position (kb) 361 362 363Strain fitness (log2 ratio) -2 -1 0 1 2at 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.588 kb on + strandat 360.589 kb on - strandat 360.692 kb on + strandat 361.015 kb on + strand, within GFF2677at 361.043 kb on + strand, within GFF2677at 361.043 kb on + strand, within GFF2677at 361.043 kb on + strand, within GFF2677at 361.044 kb on - strand, within GFF2677at 361.112 kb on + strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.115 kb on + strand, within GFF2677at 361.115 kb on + strand, within GFF2677at 361.115 kb on + strand, within GFF2677at 361.115 kb on + strand, within GFF2677at 361.345 kb on + strand, within GFF2677at 361.345 kb on + strand, within GFF2677at 361.345 kb on + strand, within GFF2677at 361.345 kb on + strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.522 kb on + strandat 361.523 kb on - strandat 361.523 kb on - strandat 361.536 kb on - strandat 361.536 kb on - strandat 361.544 kb on + strandat 361.544 kb on + strandat 361.545 kb on - strandat 361.565 kb on + strandat 361.713 kb on + strand, within GFF2678at 361.713 kb on + strand, within GFF2678at 361.714 kb on - strand, within GFF2678at 361.714 kb on - strand, within GFF2678at 361.716 kb on + strand, within GFF2678at 361.717 kb on - strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.946 kb on + strand, within GFF2678at 361.946 kb on + strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 362.030 kb on + strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.082 kb on - strand, within GFF2678at 362.112 kb on + strand, within GFF2678at 362.112 kb on + strand, within GFF2678at 362.123 kb on + strand, within GFF2678at 362.123 kb on + strand, within GFF2678at 362.124 kb on - strand, within GFF2678at 362.162 kb on + strand, within GFF2678at 362.162 kb on + strand, within GFF2678at 362.163 kb on - strand, within GFF2678at 362.198 kb on + strand, within GFF2678at 362.199 kb on - strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.312 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.352 kb on - strand, within GFF2678at 362.352 kb on - strand, within GFF2678at 362.633 kb on + strandat 362.634 kb on - strandat 362.634 kb on - strandat 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.891 kb on + strand, within GFF2679at 362.891 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.997 kb on + strand, within GFF2679at 362.997 kb on + strand, within GFF2679at 362.998 kb on - strand, within GFF2679at 363.031 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.148 kb on + strand, within GFF2679at 363.148 kb on + strand, within GFF2679at 363.156 kb on + strand, within GFF2679at 363.156 kb on + strand, within GFF2679at 363.157 kb on - strand, within GFF2679at 363.175 kb on + strand, within GFF2679at 363.176 kb on - strand, within GFF2679at 363.199 kb on + strand, within GFF2679at 363.275 kb on - strand, within GFF2679at 363.275 kb on - strand, within GFF2679at 363.311 kb on - strand, within GFF2679at 363.364 kb on + strand, within GFF2679at 363.364 kb on + strand, within GFF2679at 363.365 kb on - strand, within GFF2679at 363.365 kb on - strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.553 kb on + strand, within GFF2679at 363.553 kb on + strand, within GFF2679

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
360,543 + -0.2
360,543 + +0.3
360,543 + -0.7
360,543 + -1.5
360,543 + -0.2
360,543 + +0.5
360,543 + +0.5
360,544 - -1.2
360,544 - -0.4
360,544 - -0.5
360,544 - -0.7
360,544 - +0.3
360,544 - -0.1
360,544 - +0.2
360,588 + +0.7
360,589 - -2.3
360,692 + +0.8
361,015 + GFF2677 0.44 -1.0
361,043 + GFF2677 0.47 +0.1
361,043 + GFF2677 0.47 -0.5
361,043 + GFF2677 0.47 +0.5
361,044 - GFF2677 0.47 +0.1
361,112 + GFF2677 0.54 +0.7
361,113 - GFF2677 0.54 +0.6
361,113 - GFF2677 0.54 -0.1
361,113 - GFF2677 0.54 -0.9
361,113 - GFF2677 0.54 +0.1
361,113 - GFF2677 0.54 +1.4
361,113 - GFF2677 0.54 -1.4
361,115 + GFF2677 0.54 -0.5
361,115 + GFF2677 0.54 -0.4
361,115 + GFF2677 0.54 +1.1
361,115 + GFF2677 0.54 -2.1
361,345 + GFF2677 0.79 +0.4
361,345 + GFF2677 0.79 -2.3
361,345 + GFF2677 0.79 -0.1
361,345 + GFF2677 0.79 +0.0
361,346 - GFF2677 0.79 -0.1
361,346 - GFF2677 0.79 -1.4
361,346 - GFF2677 0.79 -0.6
361,346 - GFF2677 0.79 +0.7
361,346 - GFF2677 0.79 +0.8
361,346 - GFF2677 0.79 +0.5
361,346 - GFF2677 0.79 -0.9
361,522 + -1.7
361,523 - -0.4
361,523 - -0.5
361,536 - -0.6
361,536 - +0.2
361,544 + -1.2
361,544 + -0.0
361,545 - -0.5
361,565 + -1.2
361,713 + GFF2678 0.16 -0.3
361,713 + GFF2678 0.16 +0.5
361,714 - GFF2678 0.16 -0.3
361,714 - GFF2678 0.16 +0.1
361,716 + GFF2678 0.17 +0.3
361,717 - GFF2678 0.17 +2.0
361,913 + GFF2678 0.35 -0.2
361,913 + GFF2678 0.35 -0.3
361,913 + GFF2678 0.35 +1.1
361,913 + GFF2678 0.35 -0.2
361,914 - GFF2678 0.35 -0.2
361,914 - GFF2678 0.35 -0.3
361,914 - GFF2678 0.35 -1.0
361,914 - GFF2678 0.35 +0.1
361,946 + GFF2678 0.38 -0.8
361,946 + GFF2678 0.38 -0.4
361,947 - GFF2678 0.39 +0.3
361,947 - GFF2678 0.39 +0.4
361,947 - GFF2678 0.39 -0.9
361,947 - GFF2678 0.39 -1.6
361,947 - GFF2678 0.39 +0.5
361,947 - GFF2678 0.39 -0.7
361,947 - GFF2678 0.39 +1.0
362,030 + GFF2678 0.47 -0.2
362,031 - GFF2678 0.47 -0.2
362,031 - GFF2678 0.47 +0.2
362,031 - GFF2678 0.47 -0.2
362,082 - GFF2678 0.51 -0.4
362,112 + GFF2678 0.54 +0.7
362,112 + GFF2678 0.54 +0.1
362,123 + GFF2678 0.55 +0.3
362,123 + GFF2678 0.55 +0.8
362,124 - GFF2678 0.55 +0.7
362,162 + GFF2678 0.59 +0.3
362,162 + GFF2678 0.59 +0.2
362,163 - GFF2678 0.59 +1.4
362,198 + GFF2678 0.63 +0.4
362,199 - GFF2678 0.63 -0.3
362,292 + GFF2678 0.72 +0.9
362,292 + GFF2678 0.72 -0.2
362,292 + GFF2678 0.72 -0.4
362,292 + GFF2678 0.72 -0.9
362,292 + GFF2678 0.72 -0.8
362,292 + GFF2678 0.72 -0.7
362,292 + GFF2678 0.72 +0.0
362,293 - GFF2678 0.72 -0.2
362,293 - GFF2678 0.72 +0.6
362,293 - GFF2678 0.72 +0.6
362,293 - GFF2678 0.72 -0.4
362,312 + GFF2678 0.73 -0.9
362,351 + GFF2678 0.77 -0.1
362,351 + GFF2678 0.77 -0.6
362,351 + GFF2678 0.77 -0.1
362,352 - GFF2678 0.77 -0.9
362,352 - GFF2678 0.77 +0.1
362,633 + -1.1
362,634 - -0.2
362,634 - +0.8
362,852 + GFF2679 0.22 -0.7
362,852 + GFF2679 0.22 -1.1
362,852 + GFF2679 0.22 -2.4
362,852 + GFF2679 0.22 -0.7
362,891 + GFF2679 0.26 -1.3
362,891 + GFF2679 0.26 +0.2
362,956 + GFF2679 0.32 -1.4
362,956 + GFF2679 0.32 +0.3
362,956 + GFF2679 0.32 -0.8
362,956 + GFF2679 0.32 -0.8
362,956 + GFF2679 0.32 +1.9
362,957 - GFF2679 0.32 +1.2
362,957 - GFF2679 0.32 -0.3
362,957 - GFF2679 0.32 -0.9
362,997 + GFF2679 0.36 -0.1
362,997 + GFF2679 0.36 -1.3
362,998 - GFF2679 0.36 +1.3
363,031 + GFF2679 0.39 -0.2
363,124 + GFF2679 0.47 -0.2
363,124 + GFF2679 0.47 +0.3
363,124 + GFF2679 0.47 -2.3
363,125 - GFF2679 0.47 -1.9
363,125 - GFF2679 0.47 -0.3
363,125 - GFF2679 0.47 -0.3
363,148 + GFF2679 0.50 +0.4
363,148 + GFF2679 0.50 -0.1
363,156 + GFF2679 0.50 +1.3
363,156 + GFF2679 0.50 +0.2
363,157 - GFF2679 0.50 -0.0
363,175 + GFF2679 0.52 -0.3
363,176 - GFF2679 0.52 -0.7
363,199 + GFF2679 0.54 -0.5
363,275 - GFF2679 0.61 -0.6
363,275 - GFF2679 0.61 +0.3
363,311 - GFF2679 0.64 -0.2
363,364 + GFF2679 0.69 +0.9
363,364 + GFF2679 0.69 -0.3
363,365 - GFF2679 0.69 +0.0
363,365 - GFF2679 0.69 -0.6
363,430 + GFF2679 0.75 -0.7
363,430 + GFF2679 0.75 +0.3
363,430 + GFF2679 0.75 +0.5
363,430 + GFF2679 0.75 +0.3
363,430 + GFF2679 0.75 -0.3
363,430 + GFF2679 0.75 -0.6
363,431 - GFF2679 0.75 +0.7
363,431 - GFF2679 0.75 -0.3
363,431 - GFF2679 0.75 +1.0
363,431 - GFF2679 0.75 -0.7
363,431 - GFF2679 0.75 +0.5
363,431 - GFF2679 0.75 -0.1
363,431 - GFF2679 0.75 -0.2
363,553 + GFF2679 0.87 +0.0
363,553 + GFF2679 0.87 +0.3

Or see this region's nucleotide sequence