Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1880 and GFF1881 are separated by 73 nucleotides GFF1881 and GFF1882 are separated by 179 nucleotides GFF1882 and GFF1883 are separated by 32 nucleotides GFF1883 and GFF1884 overlap by 56 nucleotides
GFF1880 - putative glycine dehydrogenase (decarboxylating) subunit 2, at 542,258 to 543,844
GFF1880
GFF1881 - RNA pyrophosphohydrolase, at 543,918 to 544,358
GFF1881
GFF1882 - hypothetical protein, at 544,538 to 544,672
GFF1882
GFF1883 - hypothetical protein, at 544,705 to 545,298
GFF1883
GFF1884 - hypothetical protein, at 545,243 to 547,276
GFF1884
Position (kb) 544
545 Strain fitness (log2 ratio) -1
0
1
2 at 543.843 kb on - strand at 543.906 kb on + strand at 543.907 kb on - strand at 544.022 kb on + strand, within GFF1881 at 544.022 kb on + strand, within GFF1881 at 544.022 kb on + strand, within GFF1881 at 544.023 kb on - strand, within GFF1881 at 544.023 kb on - strand, within GFF1881 at 544.023 kb on - strand, within GFF1881 at 544.023 kb on - strand, within GFF1881 at 544.026 kb on + strand, within GFF1881 at 544.026 kb on + strand, within GFF1881 at 544.026 kb on + strand, within GFF1881 at 544.027 kb on - strand, within GFF1881 at 544.397 kb on + strand at 544.397 kb on + strand at 544.558 kb on - strand, within GFF1882 at 544.676 kb on + strand at 545.352 kb on + strand at 545.353 kb on - strand at 545.353 kb on - strand at 545.353 kb on - strand at 545.373 kb on - strand at 545.373 kb on - strand at 545.413 kb on - strand at 545.500 kb on - strand, within GFF1884 at 545.638 kb on - strand, within GFF1884
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 543,843 - -0.4 543,906 + +1.7 543,907 - +1.1 544,022 + GFF1881 0.24 +1.4 544,022 + GFF1881 0.24 -0.4 544,022 + GFF1881 0.24 +0.1 544,023 - GFF1881 0.24 +0.6 544,023 - GFF1881 0.24 +0.4 544,023 - GFF1881 0.24 +0.8 544,023 - GFF1881 0.24 +1.1 544,026 + GFF1881 0.24 +1.0 544,026 + GFF1881 0.24 +0.8 544,026 + GFF1881 0.24 +0.0 544,027 - GFF1881 0.25 +1.4 544,397 + -0.3 544,397 + -0.7 544,558 - GFF1882 0.15 +2.0 544,676 + -0.7 545,352 + +0.1 545,353 - +1.0 545,353 - +0.2 545,353 - -0.4 545,373 - -1.1 545,373 - -1.2 545,413 - +0.3 545,500 - GFF1884 0.13 -0.5 545,638 - GFF1884 0.19 -1.0
Or see this region's nucleotide sequence