Strain Fitness in Xanthobacter sp. DMC5 around GFF1358

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1357 and GFF1358 are separated by 574 nucleotidesGFF1358 and GFF1359 are separated by 1 nucleotides GFF1357 - hypothetical protein, at 1,470,566 to 1,470,832 GFF1357 GFF1358 - Adenylate kinase, at 1,471,407 to 1,471,994 GFF1358 GFF1359 - Protein translocase subunit SecY, at 1,471,996 to 1,473,330 GFF1359 Position (kb) 1471 1472Strain fitness (log2 ratio) -1 0 1at 1470.530 kb on - strandat 1470.586 kb on - strandat 1470.867 kb on + strandat 1470.868 kb on - strandat 1471.022 kb on + strandat 1471.023 kb on - strandat 1471.054 kb on + strandat 1471.054 kb on + strandat 1471.055 kb on - strandat 1471.055 kb on - strandat 1471.055 kb on - strandat 1471.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,470,530 - -0.8
1,470,586 - -0.7
1,470,867 + +1.1
1,470,868 - -0.5
1,471,022 + +0.4
1,471,023 - -1.1
1,471,054 + +0.6
1,471,054 + -1.3
1,471,055 - -1.5
1,471,055 - -0.5
1,471,055 - -0.2
1,471,245 - -0.6

Or see this region's nucleotide sequence