Strain Fitness in Xanthobacter sp. DMC5 around GFF1112

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1111 and GFF1112 are separated by 86 nucleotidesGFF1112 and GFF1113 are separated by 31 nucleotides GFF1111 - UDP-glucose 6-dehydrogenase, at 1,195,104 to 1,196,423 GFF1111 GFF1112 - Alginate biosynthesis protein AlgA, at 1,196,510 to 1,197,967 GFF1112 GFF1113 - Cellobiose 2-epimerase, at 1,197,999 to 1,199,144 GFF1113 Position (kb) 1196 1197 1198Strain fitness (log2 ratio) -1 0 1at 1196.488 kb on + strandat 1196.488 kb on + strandat 1196.498 kb on + strandat 1197.914 kb on + strandat 1197.915 kb on - strandat 1197.915 kb on - strandat 1197.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,196,488 + -1.0
1,196,488 + +0.3
1,196,498 + +0.3
1,197,914 + +0.6
1,197,915 - +1.5
1,197,915 - -1.4
1,197,966 - +0.5

Or see this region's nucleotide sequence