Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00253

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00252 and MIT1002_00253 overlap by 1 nucleotidesMIT1002_00253 and MIT1002_00254 are separated by 66 nucleotidesMIT1002_00254 and MIT1002_00255 are separated by 8 nucleotides MIT1002_00252: MIT1002_00252 - Cation efflux system protein CusA, at 280,553 to 283,690 _00252 MIT1002_00253: MIT1002_00253 - hypothetical protein, at 283,690 to 283,881 _00253 MIT1002_00254: MIT1002_00254 - Copper resistance protein CopC, at 283,948 to 284,340 _00254 MIT1002_00255: MIT1002_00255 - Putative copper export protein, at 284,349 to 285,263 _00255 Position (kb) 283 284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 282.739 kb on - strand, within MIT1002_00252at 282.797 kb on - strand, within MIT1002_00252at 282.805 kb on - strand, within MIT1002_00252at 282.807 kb on + strand, within MIT1002_00252at 282.815 kb on - strand, within MIT1002_00252at 282.867 kb on + strand, within MIT1002_00252at 282.898 kb on - strand, within MIT1002_00252at 282.898 kb on - strand, within MIT1002_00252at 282.913 kb on + strand, within MIT1002_00252at 282.914 kb on + strand, within MIT1002_00252at 283.000 kb on + strand, within MIT1002_00252at 283.027 kb on - strand, within MIT1002_00252at 283.035 kb on + strand, within MIT1002_00252at 283.109 kb on + strand, within MIT1002_00252at 283.155 kb on - strand, within MIT1002_00252at 283.155 kb on - strand, within MIT1002_00252at 283.279 kb on - strand, within MIT1002_00252at 283.315 kb on + strand, within MIT1002_00252at 283.404 kb on + strandat 283.413 kb on - strandat 283.446 kb on - strandat 283.449 kb on + strandat 283.449 kb on + strandat 283.449 kb on + strandat 283.449 kb on + strandat 283.449 kb on + strandat 283.449 kb on + strandat 283.449 kb on + strandat 283.449 kb on + strandat 283.454 kb on + strandat 283.454 kb on + strandat 283.454 kb on + strandat 283.454 kb on + strandat 283.454 kb on + strandat 283.454 kb on + strandat 283.454 kb on + strandat 283.454 kb on + strandat 283.457 kb on - strandat 283.457 kb on - strandat 283.457 kb on - strandat 283.457 kb on - strandat 283.462 kb on - strandat 283.462 kb on - strandat 283.462 kb on - strandat 283.462 kb on - strandat 283.462 kb on - strandat 283.462 kb on - strandat 283.462 kb on - strandat 283.462 kb on - strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.464 kb on + strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.472 kb on - strandat 283.559 kb on + strandat 283.559 kb on - strandat 283.621 kb on + strandat 283.840 kb on + strand, within MIT1002_00253at 283.849 kb on + strand, within MIT1002_00253at 283.925 kb on + strandat 283.950 kb on - strandat 283.987 kb on - strandat 284.034 kb on - strand, within MIT1002_00254at 284.034 kb on - strand, within MIT1002_00254at 284.039 kb on - strand, within MIT1002_00254at 284.110 kb on - strand, within MIT1002_00254at 284.216 kb on - strand, within MIT1002_00254at 284.231 kb on + strand, within MIT1002_00254at 284.236 kb on + strand, within MIT1002_00254at 284.319 kb on - strandat 284.321 kb on - strandat 284.355 kb on - strandat 284.367 kb on + strandat 284.399 kb on - strandat 284.414 kb on + strandat 284.429 kb on + strandat 284.670 kb on - strand, within MIT1002_00255at 284.680 kb on - strand, within MIT1002_00255at 284.687 kb on + strand, within MIT1002_00255at 284.695 kb on - strand, within MIT1002_00255at 284.811 kb on + strand, within MIT1002_00255at 284.836 kb on + strand, within MIT1002_00255at 284.870 kb on + strand, within MIT1002_00255at 284.873 kb on - strand, within MIT1002_00255

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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282,739 - MIT1002_00252 0.70 +1.2
282,797 - MIT1002_00252 0.72 +0.2
282,805 - MIT1002_00252 0.72 -0.5
282,807 + MIT1002_00252 0.72 +0.5
282,815 - MIT1002_00252 0.72 +0.6
282,867 + MIT1002_00252 0.74 -0.6
282,898 - MIT1002_00252 0.75 +0.2
282,898 - MIT1002_00252 0.75 -0.5
282,913 + MIT1002_00252 0.75 +1.5
282,914 + MIT1002_00252 0.75 -0.5
283,000 + MIT1002_00252 0.78 +0.3
283,027 - MIT1002_00252 0.79 -0.3
283,035 + MIT1002_00252 0.79 -1.8
283,109 + MIT1002_00252 0.81 -2.2
283,155 - MIT1002_00252 0.83 +1.2
283,155 - MIT1002_00252 0.83 -4.1
283,279 - MIT1002_00252 0.87 -0.2
283,315 + MIT1002_00252 0.88 -1.0
283,404 + -2.9
283,413 - -0.8
283,446 - +0.6
283,449 + +0.4
283,449 + +0.6
283,449 + -1.0
283,449 + -0.9
283,449 + +0.3
283,449 + +0.4
283,449 + -2.1
283,449 + -0.1
283,454 + +0.3
283,454 + -0.5
283,454 + +0.2
283,454 + -0.4
283,454 + -0.3
283,454 + +0.0
283,454 + +0.6
283,454 + +0.1
283,457 - +0.3
283,457 - -0.4
283,457 - +0.5
283,457 - +0.2
283,462 - +0.6
283,462 - -1.5
283,462 - +1.4
283,462 - +0.6
283,462 - +0.8
283,462 - +0.1
283,462 - +0.8
283,462 - -0.2
283,464 + -0.2
283,464 + -1.2
283,464 + +0.1
283,464 + +0.8
283,464 + +0.5
283,464 + +0.5
283,464 + -0.8
283,464 + -0.3
283,464 + +0.8
283,464 + +2.2
283,464 + -0.1
283,464 + +1.3
283,464 + +0.1
283,472 - -0.7
283,472 - -0.4
283,472 - +1.9
283,472 - +1.6
283,472 - +0.0
283,472 - +0.5
283,472 - -0.5
283,472 - +1.8
283,472 - -1.6
283,472 - +0.8
283,472 - +0.1
283,472 - +0.4
283,559 + +1.4
283,559 - -0.5
283,621 + -1.4
283,840 + MIT1002_00253 0.78 -1.2
283,849 + MIT1002_00253 0.83 -1.7
283,925 + -1.3
283,950 - +0.4
283,987 - +0.8
284,034 - MIT1002_00254 0.22 -2.3
284,034 - MIT1002_00254 0.22 -0.9
284,039 - MIT1002_00254 0.23 -0.2
284,110 - MIT1002_00254 0.41 +0.9
284,216 - MIT1002_00254 0.68 +2.4
284,231 + MIT1002_00254 0.72 +1.3
284,236 + MIT1002_00254 0.73 -2.3
284,319 - -1.8
284,321 - +0.2
284,355 - -0.4
284,367 + +0.5
284,399 - -1.6
284,414 + -2.2
284,429 + +1.4
284,670 - MIT1002_00255 0.35 -1.1
284,680 - MIT1002_00255 0.36 -0.5
284,687 + MIT1002_00255 0.37 -0.5
284,695 - MIT1002_00255 0.38 +0.2
284,811 + MIT1002_00255 0.50 +0.4
284,836 + MIT1002_00255 0.53 +2.2
284,870 + MIT1002_00255 0.57 -0.2
284,873 - MIT1002_00255 0.57 +1.1

Or see this region's nucleotide sequence