Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02686

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
2,986,077	+		MIT1002_02684	0.49	+2.6
2,986,085	-		MIT1002_02684	0.50	+0.7
2,986,096	+		MIT1002_02684	0.53	-1.1
2,986,102	+		MIT1002_02684	0.54	+0.6
2,986,104	-		MIT1002_02684	0.55	+0.2
2,986,132	+		MIT1002_02684	0.61	-0.1
2,986,132	+		MIT1002_02684	0.61	+0.7
2,986,140	-		MIT1002_02684	0.62	+0.5
2,986,140	-		MIT1002_02684	0.62	+0.3
2,986,140	-		MIT1002_02684	0.62	-0.5
2,986,140	-		MIT1002_02684	0.62	-0.2
2,986,168	-		MIT1002_02684	0.69	+1.7
2,986,169	+		MIT1002_02684	0.69	+2.0
2,986,192	-		MIT1002_02684	0.74	-1.8
2,986,253	+		MIT1002_02684	0.87	+0.8
2,986,348	-				-1.4
2,986,377	+				-0.3
2,986,380	+		MIT1002_02685	0.10	-0.5
2,986,425	+		MIT1002_02685	0.16	+0.3
2,986,449	+		MIT1002_02685	0.20	-0.2
2,986,482	-		MIT1002_02685	0.24	-1.7
2,986,525	+		MIT1002_02685	0.30	-0.2
2,986,525	+		MIT1002_02685	0.30	-2.5
2,986,528	-		MIT1002_02685	0.31	-1.9
2,986,533	-		MIT1002_02685	0.31	-2.4
2,986,619	-		MIT1002_02685	0.43	-0.5
2,986,631	-		MIT1002_02685	0.45	-1.7
2,986,631	-		MIT1002_02685	0.45	-0.2
2,986,644	+		MIT1002_02685	0.47	+0.0
2,986,734	-		MIT1002_02685	0.59	-0.2
2,986,741	+		MIT1002_02685	0.60	-0.5
2,986,785	-		MIT1002_02685	0.66	-1.0
2,986,785	-		MIT1002_02685	0.66	-1.8
2,986,801	-		MIT1002_02685	0.69	-0.1
2,986,814	-		MIT1002_02685	0.70	+2.5
2,986,833	-		MIT1002_02685	0.73	-1.8
2,986,894	+		MIT1002_02685	0.82	-0.3
2,986,902	+		MIT1002_02685	0.83	+1.0
2,986,902	+		MIT1002_02685	0.83	-0.2
2,986,910	-		MIT1002_02685	0.84	-2.0
2,986,981	-				+2.5
2,986,993	-				+1.3
2,987,029	-				-0.9
2,987,065	-				-3.0
2,987,076	+				-1.4
2,987,084	-				+0.5
2,987,093	+				-0.9
2,987,102	-				-0.3
2,987,113	+				+0.4
2,987,138	+				+0.8
2,987,138	+				+1.4
2,987,138	+				-2.6
2,987,205	+		MIT1002_02686	0.13	-0.1
2,987,223	+		MIT1002_02686	0.15	-1.9
2,987,223	+		MIT1002_02686	0.15	+0.3
2,987,273	+		MIT1002_02686	0.19	-1.0
2,987,417	-		MIT1002_02686	0.30	-0.2
2,987,453	+		MIT1002_02686	0.33	+0.1
2,987,453	+		MIT1002_02686	0.33	-0.7
2,987,473	+		MIT1002_02686	0.34	-0.5
2,987,495	+		MIT1002_02686	0.36	-3.4
2,987,524	+		MIT1002_02686	0.38	+1.6
2,987,550	+		MIT1002_02686	0.41	-0.5
2,987,563	+		MIT1002_02686	0.42	+0.4
2,987,571	-		MIT1002_02686	0.42	-1.0
2,987,571	-		MIT1002_02686	0.42	-1.6
2,987,632	+		MIT1002_02686	0.47	-1.1
2,987,668	-		MIT1002_02686	0.50	-1.9
2,987,671	+		MIT1002_02686	0.50	+0.5
2,987,671	+		MIT1002_02686	0.50	+1.4
2,987,676	+		MIT1002_02686	0.50	+1.6
2,987,676	+		MIT1002_02686	0.50	-0.3
2,987,676	+		MIT1002_02686	0.50	-1.7
2,987,679	-		MIT1002_02686	0.51	-0.1
2,987,709	-		MIT1002_02686	0.53	-1.1
2,987,772	+		MIT1002_02686	0.58	-0.6
2,987,840	-		MIT1002_02686	0.63	-0.6
2,988,073	-		MIT1002_02686	0.82	+0.0
2,988,124	+		MIT1002_02686	0.86	-2.0
2,988,138	+		MIT1002_02686	0.87	-1.8
2,988,141	+		MIT1002_02686	0.87	+0.7
2,988,141	+		MIT1002_02686	0.87	+1.1
2,988,195	+				-0.1
2,988,316	+				-1.6
2,988,322	+				+1.2
2,988,324	-				+2.2
2,988,330	-				-1.9
2,988,342	+				+0.1
2,988,343	+				-1.2
2,988,348	+				+1.1
2,988,351	-				-1.6
2,988,351	-				-1.0
2,988,351	-				-0.5
2,988,356	-				+1.4
2,988,358	+				-1.5
2,988,376	+		MIT1002_02687	0.10	-0.3
2,988,390	+		MIT1002_02687	0.12	+0.5
2,988,444	+		MIT1002_02687	0.19	-1.1
2,988,449	+		MIT1002_02687	0.20	-0.9
2,988,460	+		MIT1002_02687	0.22	-1.4
2,988,478	-		MIT1002_02687	0.24	+0.3
2,988,484	+		MIT1002_02687	0.25	-0.4
2,988,487	+		MIT1002_02687	0.25	-0.1
2,988,495	-		MIT1002_02687	0.26	-0.6
2,988,497	-		MIT1002_02687	0.27	+0.4
2,988,524	+		MIT1002_02687	0.30	+0.6
2,988,532	-		MIT1002_02687	0.31	-1.4
2,988,542	-		MIT1002_02687	0.33	-0.9
2,988,542	-		MIT1002_02687	0.33	-0.6
2,988,542	-		MIT1002_02687	0.33	-0.6
2,988,544	+		MIT1002_02687	0.33	-0.1
2,988,563	+		MIT1002_02687	0.35	-0.1
2,988,605	-		MIT1002_02687	0.41	-1.7
2,988,684	+		MIT1002_02687	0.52	-0.5
2,988,684	+		MIT1002_02687	0.52	-1.5
2,988,692	-		MIT1002_02687	0.53	-0.5
2,988,692	-		MIT1002_02687	0.53	-0.1
2,988,745	+		MIT1002_02687	0.60	-1.4
2,988,753	-		MIT1002_02687	0.61	-1.3
2,988,776	+		MIT1002_02687	0.64	-0.4
2,988,929	+		MIT1002_02687	0.85	-0.0
2,988,978	+				-1.0
2,988,986	-				+0.3
2,988,999	-				-1.6
2,989,014	-				-1.5
2,989,014	-				-1.0
2,989,076	+				+1.1
2,989,076	+				-1.5
2,989,076	+				-1.6
2,989,076	+				-0.9
2,989,084	-				+2.8
2,989,084	-				+1.2
2,989,091	-				-0.6
2,989,106	+				+1.5
2,989,135	-				-1.7
2,989,196	-		MIT1002_02688	0.12	+1.1
2,989,196	-		MIT1002_02688	0.12	-0.1
2,989,206	-		MIT1002_02688	0.13	-0.5
2,989,237	+		MIT1002_02688	0.15	-1.6
2,989,237	+		MIT1002_02688	0.15	-1.2
2,989,296	-		MIT1002_02688	0.20	-2.2
2,989,301	+		MIT1002_02688	0.20	-0.3