Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07360

Experiment: Bas22

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07350 and ECOLIN_RS07355 are separated by 269 nucleotidesECOLIN_RS07355 and ECOLIN_RS07360 are separated by 145 nucleotidesECOLIN_RS07360 and ECOLIN_RS07365 are separated by 43 nucleotidesECOLIN_RS07365 and ECOLIN_RS07370 are separated by 184 nucleotides ECOLIN_RS07350: ECOLIN_RS07350 - sodium-potassium/proton antiporter ChaA, at 1,435,494 to 1,436,594 _RS07350 ECOLIN_RS07355: ECOLIN_RS07355 - putative cation transport regulator ChaB, at 1,436,864 to 1,437,094 _RS07355 ECOLIN_RS07360: ECOLIN_RS07360 - glutathione-specific gamma-glutamylcyclotransferase, at 1,437,240 to 1,437,935 _RS07360 ECOLIN_RS07365: ECOLIN_RS07365 - DsrE/F sulfur relay family protein YchN, at 1,437,979 to 1,438,332 _RS07365 ECOLIN_RS07370: ECOLIN_RS07370 - inverse autotransporter invasin YchO, at 1,438,517 to 1,439,911 _RS07370 Position (kb) 1437 1438Strain fitness (log2 ratio) -1 0 1at 1437.073 kb on + strandat 1438.821 kb on + strand, within ECOLIN_RS07370

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas22
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1,437,073 + +0.0
1,438,821 + ECOLIN_RS07370 0.22 +0.8

Or see this region's nucleotide sequence