Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04543 and MPMX19_04544 are separated by 141 nucleotides MPMX19_04544 and MPMX19_04545 are separated by 44 nucleotides MPMX19_04545 and MPMX19_04546 are separated by 119 nucleotides
MPMX19_04543: MPMX19_04543 - hypothetical protein, at 916,075 to 916,809
_04543
MPMX19_04544: MPMX19_04544 - hypothetical protein, at 916,951 to 920,484
_04544
MPMX19_04545: MPMX19_04545 - hypothetical protein, at 920,529 to 921,206
_04545
MPMX19_04546: MPMX19_04546 - Glutamine transport ATP-binding protein GlnQ, at 921,326 to 922,054
_04546
Position (kb) 916
917
918
919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 915.961 kb on - strand at 915.961 kb on - strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.330 kb on + strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.729 kb on - strand, within MPMX19_04543 at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.302 kb on + strand at 917.303 kb on - strand at 917.303 kb on - strand at 917.446 kb on + strand, within MPMX19_04544 at 917.447 kb on - strand, within MPMX19_04544 at 917.447 kb on - strand, within MPMX19_04544 at 917.509 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.836 kb on + strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 918.038 kb on - strand, within MPMX19_04544 at 918.266 kb on - strand, within MPMX19_04544 at 918.266 kb on - strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.536 kb on - strand, within MPMX19_04544 at 918.536 kb on - strand, within MPMX19_04544 at 918.536 kb on - strand, within MPMX19_04544 at 918.536 kb on - strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.677 kb on - strand, within MPMX19_04544 at 918.677 kb on - strand, within MPMX19_04544 at 918.677 kb on - strand, within MPMX19_04544 at 918.703 kb on + strand, within MPMX19_04544 at 918.703 kb on + strand, within MPMX19_04544 at 918.703 kb on + strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 919.157 kb on - strand, within MPMX19_04544 at 919.419 kb on + strand, within MPMX19_04544 at 919.420 kb on - strand, within MPMX19_04544 at 919.420 kb on - strand, within MPMX19_04544 at 919.420 kb on - strand, within MPMX19_04544 at 919.420 kb on - strand, within MPMX19_04544 at 919.636 kb on + strand, within MPMX19_04544 at 919.870 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.886 kb on - strand, within MPMX19_04544 at 919.886 kb on - strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.988 kb on - strand, within MPMX19_04544 at 919.988 kb on - strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.003 kb on - strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.015 kb on - strand, within MPMX19_04544 at 920.015 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.161 kb on + strand at 920.161 kb on + strand at 920.161 kb on + strand at 920.161 kb on + strand at 920.162 kb on - strand at 920.162 kb on - strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.285 kb on - strand at 920.285 kb on - strand at 920.285 kb on - strand at 920.576 kb on + strand at 920.576 kb on + strand at 920.577 kb on - strand at 920.938 kb on + strand, within MPMX19_04545 at 920.938 kb on + strand, within MPMX19_04545 at 921.134 kb on - strand, within MPMX19_04545 at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 915,961 - -1.9 915,961 - -0.9 916,065 + -0.7 916,065 + -1.7 916,065 + -2.1 916,065 + +0.3 916,065 + -0.4 916,065 + +1.1 916,065 + +0.8 916,065 + -2.3 916,066 - +1.5 916,066 - -0.6 916,066 - +1.5 916,066 - +0.2 916,066 - -0.2 916,330 + MPMX19_04543 0.35 -0.8 916,331 - MPMX19_04543 0.35 -0.7 916,331 - MPMX19_04543 0.35 -1.0 916,331 - MPMX19_04543 0.35 -1.0 916,729 - MPMX19_04543 0.89 +0.2 916,786 + -0.2 916,786 + -0.2 916,786 + +0.0 916,786 + -0.0 916,786 + -0.6 916,786 + -0.9 916,786 + -0.9 916,786 + -0.1 916,786 + -0.0 916,786 + -1.1 916,786 + -0.5 916,786 + -0.6 916,786 + -1.0 916,786 + -0.3 916,786 + -0.4 916,786 + -0.8 916,786 + +0.4 916,786 + -2.6 916,786 + +0.8 916,786 + +0.0 916,786 + -0.3 916,786 + -0.5 916,786 + -0.2 916,787 - +1.0 916,787 - -0.7 916,787 - -1.0 916,787 - -2.2 916,787 - -1.9 916,787 - -0.7 916,787 - -1.8 916,787 - -1.0 916,787 - -0.2 916,787 - -0.5 916,787 - -1.7 916,787 - -0.5 916,787 - -0.6 916,787 - +0.2 916,787 - -2.3 916,999 + -0.4 916,999 + -0.7 916,999 + -0.8 916,999 + -1.3 916,999 + +0.8 916,999 + -0.7 916,999 + +0.1 916,999 + -0.0 916,999 + -2.2 916,999 + -0.4 916,999 + -0.6 916,999 + -1.7 916,999 + +1.4 917,000 - +1.2 917,000 - +0.0 917,000 - -0.0 917,000 - -0.4 917,000 - +0.7 917,302 + +0.3 917,303 - -0.2 917,303 - -1.2 917,446 + MPMX19_04544 0.14 -0.6 917,447 - MPMX19_04544 0.14 -1.8 917,447 - MPMX19_04544 0.14 -1.1 917,509 + MPMX19_04544 0.16 -1.4 917,743 + MPMX19_04544 0.22 -2.9 917,743 + MPMX19_04544 0.22 -0.6 917,743 + MPMX19_04544 0.22 -1.2 917,743 + MPMX19_04544 0.22 -1.2 917,743 + MPMX19_04544 0.22 -0.9 917,743 + MPMX19_04544 0.22 -1.0 917,743 + MPMX19_04544 0.22 +0.6 917,743 + MPMX19_04544 0.22 -0.6 917,743 + MPMX19_04544 0.22 -1.2 917,744 - MPMX19_04544 0.22 -0.6 917,744 - MPMX19_04544 0.22 -0.6 917,744 - MPMX19_04544 0.22 -1.0 917,744 - MPMX19_04544 0.22 +0.1 917,744 - MPMX19_04544 0.22 +0.6 917,744 - MPMX19_04544 0.22 -1.2 917,744 - MPMX19_04544 0.22 -0.7 917,744 - MPMX19_04544 0.22 -2.4 917,744 - MPMX19_04544 0.22 -0.0 917,836 + MPMX19_04544 0.25 +0.8 917,837 - MPMX19_04544 0.25 -0.8 917,837 - MPMX19_04544 0.25 +0.8 917,837 - MPMX19_04544 0.25 -0.6 917,837 - MPMX19_04544 0.25 +0.7 917,837 - MPMX19_04544 0.25 +0.1 917,837 - MPMX19_04544 0.25 -1.6 918,038 - MPMX19_04544 0.31 +0.6 918,266 - MPMX19_04544 0.37 -1.4 918,266 - MPMX19_04544 0.37 -0.5 918,382 + MPMX19_04544 0.40 -1.0 918,382 + MPMX19_04544 0.40 -0.9 918,382 + MPMX19_04544 0.40 -1.2 918,382 + MPMX19_04544 0.40 -0.6 918,382 + MPMX19_04544 0.40 +1.0 918,382 + MPMX19_04544 0.40 -1.3 918,382 + MPMX19_04544 0.40 +0.3 918,382 + MPMX19_04544 0.40 +0.0 918,382 + MPMX19_04544 0.40 -0.0 918,382 + MPMX19_04544 0.40 -0.3 918,382 + MPMX19_04544 0.40 -0.1 918,382 + MPMX19_04544 0.40 -0.7 918,382 + MPMX19_04544 0.40 -0.0 918,383 - MPMX19_04544 0.41 -1.6 918,383 - MPMX19_04544 0.41 +1.1 918,383 - MPMX19_04544 0.41 -0.8 918,383 - MPMX19_04544 0.41 +0.2 918,383 - MPMX19_04544 0.41 +0.6 918,475 + MPMX19_04544 0.43 -1.5 918,475 + MPMX19_04544 0.43 -2.7 918,475 + MPMX19_04544 0.43 -1.1 918,475 + MPMX19_04544 0.43 -0.4 918,475 + MPMX19_04544 0.43 -1.0 918,475 + MPMX19_04544 0.43 -0.3 918,476 - MPMX19_04544 0.43 -1.3 918,476 - MPMX19_04544 0.43 -0.4 918,476 - MPMX19_04544 0.43 -0.6 918,476 - MPMX19_04544 0.43 -0.3 918,476 - MPMX19_04544 0.43 -1.4 918,476 - MPMX19_04544 0.43 +1.0 918,476 - MPMX19_04544 0.43 -2.3 918,476 - MPMX19_04544 0.43 +0.6 918,476 - MPMX19_04544 0.43 -3.0 918,536 - MPMX19_04544 0.45 +0.4 918,536 - MPMX19_04544 0.45 -1.3 918,536 - MPMX19_04544 0.45 -0.6 918,536 - MPMX19_04544 0.45 -0.9 918,676 + MPMX19_04544 0.49 -0.6 918,676 + MPMX19_04544 0.49 +0.5 918,676 + MPMX19_04544 0.49 -1.0 918,676 + MPMX19_04544 0.49 +0.2 918,676 + MPMX19_04544 0.49 -0.2 918,677 - MPMX19_04544 0.49 -2.1 918,677 - MPMX19_04544 0.49 -0.8 918,677 - MPMX19_04544 0.49 -1.2 918,703 + MPMX19_04544 0.50 -0.2 918,703 + MPMX19_04544 0.50 +1.0 918,703 + MPMX19_04544 0.50 +0.4 918,704 - MPMX19_04544 0.50 +0.4 918,704 - MPMX19_04544 0.50 -0.7 918,704 - MPMX19_04544 0.50 +0.0 918,704 - MPMX19_04544 0.50 -0.1 918,704 - MPMX19_04544 0.50 +0.0 918,784 + MPMX19_04544 0.52 -0.2 918,784 + MPMX19_04544 0.52 +0.5 918,784 + MPMX19_04544 0.52 -0.4 918,784 + MPMX19_04544 0.52 +0.2 918,784 + MPMX19_04544 0.52 +1.0 918,785 - MPMX19_04544 0.52 -0.7 918,785 - MPMX19_04544 0.52 -1.3 918,785 - MPMX19_04544 0.52 +0.7 918,785 - MPMX19_04544 0.52 -1.2 918,785 - MPMX19_04544 0.52 -0.2 918,785 - MPMX19_04544 0.52 +1.0 918,785 - MPMX19_04544 0.52 -0.8 918,785 - MPMX19_04544 0.52 -0.5 919,157 - MPMX19_04544 0.62 +0.4 919,419 + MPMX19_04544 0.70 +0.4 919,420 - MPMX19_04544 0.70 -0.2 919,420 - MPMX19_04544 0.70 +0.2 919,420 - MPMX19_04544 0.70 -2.7 919,420 - MPMX19_04544 0.70 +0.6 919,636 + MPMX19_04544 0.76 +0.4 919,870 + MPMX19_04544 0.83 -0.7 919,885 + MPMX19_04544 0.83 +0.5 919,885 + MPMX19_04544 0.83 -0.3 919,885 + MPMX19_04544 0.83 -0.6 919,886 - MPMX19_04544 0.83 -0.3 919,886 - MPMX19_04544 0.83 -0.2 919,987 + MPMX19_04544 0.86 -0.8 919,987 + MPMX19_04544 0.86 -0.0 919,987 + MPMX19_04544 0.86 -1.1 919,987 + MPMX19_04544 0.86 -1.0 919,987 + MPMX19_04544 0.86 -0.5 919,987 + MPMX19_04544 0.86 -1.1 919,987 + MPMX19_04544 0.86 -1.2 919,988 - MPMX19_04544 0.86 +0.4 919,988 - MPMX19_04544 0.86 -0.3 920,002 + MPMX19_04544 0.86 +0.8 920,002 + MPMX19_04544 0.86 +0.1 920,002 + MPMX19_04544 0.86 -0.4 920,002 + MPMX19_04544 0.86 -1.2 920,002 + MPMX19_04544 0.86 +0.8 920,003 - MPMX19_04544 0.86 +0.6 920,014 + MPMX19_04544 0.87 +1.8 920,014 + MPMX19_04544 0.87 -0.5 920,014 + MPMX19_04544 0.87 -0.2 920,015 - MPMX19_04544 0.87 -1.0 920,015 - MPMX19_04544 0.87 -0.7 920,033 - MPMX19_04544 0.87 -2.0 920,033 - MPMX19_04544 0.87 -1.4 920,033 - MPMX19_04544 0.87 +1.1 920,161 + -2.2 920,161 + +2.4 920,161 + -0.2 920,161 + +0.2 920,162 - -0.0 920,162 - +0.3 920,284 + -0.4 920,284 + -0.2 920,284 + +0.7 920,284 + -0.2 920,284 + -1.1 920,284 + -2.3 920,284 + +0.2 920,285 - -0.8 920,285 - -1.2 920,285 - +0.8 920,576 + -0.6 920,576 + +0.8 920,577 - +0.3 920,938 + MPMX19_04545 0.60 -1.6 920,938 + MPMX19_04545 0.60 +0.1 921,134 - MPMX19_04545 0.89 -0.7 921,206 + -2.6 921,206 + -0.4 921,206 + +0.8 921,206 + +0.8 921,206 + -1.6 921,206 + -0.7 921,206 + -0.3 921,206 + -1.2 921,207 - -0.2 921,207 - -0.0 921,207 - -0.6 921,207 - -0.6 921,207 - +0.1 921,207 - +0.2 921,297 + +0.2
Or see this region's nucleotide sequence