Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02720

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
2,855,637	+				+1.1
2,855,638	-				-0.5
2,855,685	+				-1.1
2,855,685	+				+0.5
2,855,685	+				+0.1
2,855,685	+				+0.6
2,855,685	+				-1.6
2,855,685	+				-0.6
2,855,685	+				-1.0
2,855,686	-				-1.1
2,855,686	-				-0.2
2,855,748	+		MPMX19_02719	0.13	-0.0
2,855,748	+		MPMX19_02719	0.13	+0.1
2,855,748	+		MPMX19_02719	0.13	-0.3
2,855,748	+		MPMX19_02719	0.13	-1.1
2,855,749	-		MPMX19_02719	0.13	-1.9
2,855,749	-		MPMX19_02719	0.13	-0.3
2,855,832	+		MPMX19_02719	0.22	+1.7
2,855,832	+		MPMX19_02719	0.22	+0.5
2,855,832	+		MPMX19_02719	0.22	-0.6
2,855,832	+		MPMX19_02719	0.22	+0.1
2,855,832	+		MPMX19_02719	0.22	+0.6
2,855,832	+		MPMX19_02719	0.22	-1.3
2,855,832	+		MPMX19_02719	0.22	-0.9
2,855,832	+		MPMX19_02719	0.22	-2.1
2,855,832	+		MPMX19_02719	0.22	-1.9
2,855,832	+		MPMX19_02719	0.22	-0.0
2,855,833	-		MPMX19_02719	0.22	-2.3
2,855,833	-		MPMX19_02719	0.22	-0.4
2,855,833	-		MPMX19_02719	0.22	+2.7
2,855,833	-		MPMX19_02719	0.22	+1.5
2,855,833	-		MPMX19_02719	0.22	-0.3
2,855,833	-		MPMX19_02719	0.22	+1.2
2,855,833	-		MPMX19_02719	0.22	-2.0
2,855,833	-		MPMX19_02719	0.22	+0.7
2,855,833	-		MPMX19_02719	0.22	-1.1
2,855,833	-		MPMX19_02719	0.22	-0.4
2,855,833	-		MPMX19_02719	0.22	-0.3
2,855,833	-		MPMX19_02719	0.22	-1.7
2,855,880	+		MPMX19_02719	0.28	-0.4
2,855,880	+		MPMX19_02719	0.28	+0.4
2,855,880	+		MPMX19_02719	0.28	+0.3
2,855,880	+		MPMX19_02719	0.28	-2.1
2,855,880	+		MPMX19_02719	0.28	-1.1
2,855,880	+		MPMX19_02719	0.28	-1.0
2,855,880	+		MPMX19_02719	0.28	-0.4
2,855,880	+		MPMX19_02719	0.28	-1.4
2,855,880	+		MPMX19_02719	0.28	-2.4
2,855,880	+		MPMX19_02719	0.28	+0.9
2,855,880	+		MPMX19_02719	0.28	-1.4
2,855,880	+		MPMX19_02719	0.28	+0.1
2,855,880	+		MPMX19_02719	0.28	-1.1
2,855,880	+		MPMX19_02719	0.28	+0.3
2,855,880	+		MPMX19_02719	0.28	+0.1
2,855,880	+		MPMX19_02719	0.28	-1.2
2,855,880	+		MPMX19_02719	0.28	+0.1
2,855,880	+		MPMX19_02719	0.28	-0.4
2,855,880	+		MPMX19_02719	0.28	-0.5
2,855,880	+		MPMX19_02719	0.28	-0.1
2,855,880	+		MPMX19_02719	0.28	-0.7
2,855,880	+		MPMX19_02719	0.28	-0.3
2,855,880	+		MPMX19_02719	0.28	+0.5
2,855,880	+		MPMX19_02719	0.28	-1.0
2,855,880	+		MPMX19_02719	0.28	-0.9
2,855,880	+		MPMX19_02719	0.28	-0.4
2,855,880	+		MPMX19_02719	0.28	-0.3
2,855,880	+		MPMX19_02719	0.28	-0.6
2,855,880	+		MPMX19_02719	0.28	-0.6
2,855,880	+		MPMX19_02719	0.28	-0.8
2,855,881	-		MPMX19_02719	0.28	-1.4
2,855,881	-		MPMX19_02719	0.28	-0.7
2,855,881	-		MPMX19_02719	0.28	-2.9
2,855,881	-		MPMX19_02719	0.28	-1.3
2,855,881	-		MPMX19_02719	0.28	-1.2
2,855,881	-		MPMX19_02719	0.28	-0.9
2,855,881	-		MPMX19_02719	0.28	-0.2
2,855,881	-		MPMX19_02719	0.28	+0.9
2,855,881	-		MPMX19_02719	0.28	+0.5
2,855,881	-		MPMX19_02719	0.28	-1.4
2,855,881	-		MPMX19_02719	0.28	+1.5
2,855,881	-		MPMX19_02719	0.28	-2.2
2,855,881	-		MPMX19_02719	0.28	-1.3
2,855,881	-		MPMX19_02719	0.28	-0.5
2,855,881	-		MPMX19_02719	0.28	-0.0
2,855,881	-		MPMX19_02719	0.28	+0.3
2,855,881	-		MPMX19_02719	0.28	+0.1
2,855,881	-		MPMX19_02719	0.28	-1.0
2,855,881	-		MPMX19_02719	0.28	-0.8
2,855,881	-		MPMX19_02719	0.28	-0.1
2,855,881	-		MPMX19_02719	0.28	-0.4
2,855,881	-		MPMX19_02719	0.28	-1.6
2,855,881	-		MPMX19_02719	0.28	-0.3
2,855,881	-		MPMX19_02719	0.28	-0.8
2,855,881	-		MPMX19_02719	0.28	-1.3
2,855,881	-		MPMX19_02719	0.28	-0.9
2,856,030	+		MPMX19_02719	0.45	+0.0
2,856,069	+		MPMX19_02719	0.49	+1.5
2,856,069	+		MPMX19_02719	0.49	-1.2
2,856,070	-		MPMX19_02719	0.50	-0.2
2,856,070	-		MPMX19_02719	0.50	+0.4
2,856,070	-		MPMX19_02719	0.50	-1.3
2,856,070	-		MPMX19_02719	0.50	-0.6
2,856,070	-		MPMX19_02719	0.50	-0.3
2,856,078	+		MPMX19_02719	0.50	+0.4
2,856,078	+		MPMX19_02719	0.50	-1.9
2,856,078	+		MPMX19_02719	0.50	-0.0
2,856,079	-		MPMX19_02719	0.51	-0.3
2,856,183	+		MPMX19_02719	0.62	+2.3
2,856,183	+		MPMX19_02719	0.62	-1.9
2,856,183	+		MPMX19_02719	0.62	-0.4
2,856,183	+		MPMX19_02719	0.62	+0.1
2,856,183	+		MPMX19_02719	0.62	+0.7
2,856,184	-		MPMX19_02719	0.63	-0.4
2,856,184	-		MPMX19_02719	0.63	-0.4
2,856,184	-		MPMX19_02719	0.63	-1.1
2,856,205	-		MPMX19_02719	0.65	-1.4
2,856,475	-				+0.5
2,856,556	+				+0.0
2,856,556	+				-2.0
2,856,556	+				+0.1
2,856,556	+				-2.3
2,856,556	+				+1.0
2,856,556	+				-0.3
2,856,556	+				-0.4
2,856,556	+				+0.3
2,856,556	+				-1.6
2,856,556	+				-1.3
2,856,557	-				-0.9
2,856,557	-				+0.4
2,856,557	-				+0.1
2,856,557	-				-1.6
2,856,557	-				-0.1
2,856,557	-				-1.9
2,856,557	-				-0.3
2,856,557	-				-1.1
2,856,571	+				-1.2
2,856,571	+				-3.1
2,856,571	+				+0.1
2,856,571	+				+1.2
2,856,571	+				+0.6
2,856,571	+				-0.9
2,856,571	+				+0.4
2,856,571	+				-2.0
2,856,571	+				+0.5
2,856,572	-				-0.7
2,856,572	-				-0.0
2,856,572	-				+0.0
2,856,572	-				+0.7
2,856,572	-				-0.9
2,856,572	-				+1.3
2,856,572	-				-1.9
2,856,572	-				-0.7
2,856,624	+				+0.8
2,856,624	+				+0.5
2,856,624	+				+0.4
2,856,624	+				+1.2
2,856,624	+				+0.1
2,856,624	+				+0.6
2,856,624	+				+0.3
2,856,624	+				-3.6
2,856,624	+				-0.5
2,856,624	+				-0.6
2,856,624	+				-0.6
2,856,624	+				-0.7
2,856,625	-				-0.9
2,856,625	-				-1.4
2,856,625	-				-0.0
2,856,625	-				+0.6
2,856,625	-				-1.1
2,856,625	-				+1.4
2,856,625	-				-1.3
2,856,625	-				+1.1
2,856,625	-				-0.4
2,856,625	-				-0.6
2,856,625	-				+0.7
2,856,625	-				-0.9
2,856,652	+				-0.6
2,856,652	+				-0.7
2,856,653	-				+0.3
2,857,054	+		MPMX19_02720	0.49	-1.1
2,857,054	+		MPMX19_02720	0.49	-2.5
2,857,054	+		MPMX19_02720	0.49	-0.1
2,857,054	+		MPMX19_02720	0.49	-0.5
2,857,054	+		MPMX19_02720	0.49	-0.4
2,857,054	+		MPMX19_02720	0.49	+0.8
2,857,055	-		MPMX19_02720	0.49	-1.1
2,857,055	-		MPMX19_02720	0.49	-0.1
2,857,055	-		MPMX19_02720	0.49	-0.1
2,857,055	-		MPMX19_02720	0.49	-2.0
2,857,055	-		MPMX19_02720	0.49	-0.6
2,857,055	-		MPMX19_02720	0.49	-0.3
2,857,055	-		MPMX19_02720	0.49	-0.3
2,857,198	+		MPMX19_02720	0.66	-0.6
2,857,198	+		MPMX19_02720	0.66	+0.4
2,857,198	+		MPMX19_02720	0.66	-0.1
2,857,198	+		MPMX19_02720	0.66	+0.2
2,857,198	+		MPMX19_02720	0.66	-1.1
2,857,198	+		MPMX19_02720	0.66	-0.3
2,857,198	+		MPMX19_02720	0.66	-0.4
2,857,198	+		MPMX19_02720	0.66	+0.2
2,857,198	+		MPMX19_02720	0.66	-0.6
2,857,199	-		MPMX19_02720	0.66	+0.9
2,857,199	-		MPMX19_02720	0.66	-0.6
2,857,199	-		MPMX19_02720	0.66	-0.3
2,857,199	-		MPMX19_02720	0.66	-1.9
2,857,199	-		MPMX19_02720	0.66	-1.6
2,857,199	-		MPMX19_02720	0.66	-0.9
2,857,199	-		MPMX19_02720	0.66	+0.1
2,857,204	+		MPMX19_02720	0.67	+0.3
2,857,237	+		MPMX19_02720	0.71	-1.1
2,857,237	+		MPMX19_02720	0.71	-1.2
2,857,237	+		MPMX19_02720	0.71	+0.5
2,857,237	+		MPMX19_02720	0.71	-0.0
2,857,237	+		MPMX19_02720	0.71	-0.5
2,857,237	+		MPMX19_02720	0.71	-1.2
2,857,237	+		MPMX19_02720	0.71	-2.3
2,857,238	-		MPMX19_02720	0.71	-1.4
2,857,511	+				-0.3
2,857,511	+				-0.1
2,857,511	+				-0.2
2,857,583	+				-0.1
2,857,583	+				-2.0
2,857,583	+				-0.6
2,857,583	+				-2.4
2,857,584	-				-1.3
2,857,993	-				-0.6
2,857,993	-				-0.6
2,857,993	-				-1.4