Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11300 and HMPREF1078_RS11305 are separated by 116 nucleotides HMPREF1078_RS11305 and HMPREF1078_RS11310 are separated by 6 nucleotides HMPREF1078_RS11310 and HMPREF1078_RS11315 are separated by 11 nucleotides
HMPREF1078_RS11300: HMPREF1078_RS11300 - phosphoribosyltransferase family protein, at 182,001 to 182,693
_RS11300
HMPREF1078_RS11305: HMPREF1078_RS11305 - orotate phosphoribosyltransferase, at 182,810 to 183,451
_RS11305
HMPREF1078_RS11310: HMPREF1078_RS11310 - polyketide cyclase, at 183,458 to 183,868
_RS11310
HMPREF1078_RS11315: HMPREF1078_RS11315 - argininosuccinate lyase, at 183,880 to 185,217
_RS11315
Position (kb) 183
184 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 182.530 kb on + strand, within HMPREF1078_RS11300 at 182.548 kb on + strand, within HMPREF1078_RS11300 at 182.600 kb on + strand, within HMPREF1078_RS11300 at 182.604 kb on - strand, within HMPREF1078_RS11300 at 182.639 kb on + strand at 182.639 kb on + strand at 182.639 kb on + strand at 182.640 kb on - strand at 182.675 kb on - strand at 182.680 kb on + strand at 182.681 kb on - strand at 182.681 kb on - strand at 182.692 kb on - strand at 182.713 kb on + strand at 182.714 kb on - strand at 182.718 kb on + strand at 182.719 kb on - strand at 182.719 kb on - strand at 182.719 kb on - strand at 182.722 kb on + strand at 182.723 kb on - strand at 182.723 kb on - strand at 182.724 kb on + strand at 182.724 kb on + strand at 183.449 kb on + strand at 183.509 kb on - strand, within HMPREF1078_RS11310 at 183.517 kb on + strand, within HMPREF1078_RS11310 at 183.517 kb on + strand, within HMPREF1078_RS11310 at 183.517 kb on + strand, within HMPREF1078_RS11310 at 183.517 kb on + strand, within HMPREF1078_RS11310 at 183.518 kb on - strand, within HMPREF1078_RS11310 at 183.518 kb on - strand, within HMPREF1078_RS11310 at 183.540 kb on + strand, within HMPREF1078_RS11310 at 183.540 kb on + strand, within HMPREF1078_RS11310 at 183.637 kb on - strand, within HMPREF1078_RS11310 at 183.726 kb on + strand, within HMPREF1078_RS11310 at 183.736 kb on - strand, within HMPREF1078_RS11310 at 183.762 kb on + strand, within HMPREF1078_RS11310 at 183.791 kb on - strand, within HMPREF1078_RS11310 at 183.805 kb on - strand, within HMPREF1078_RS11310 at 183.805 kb on - strand, within HMPREF1078_RS11310 at 183.864 kb on - strand at 183.864 kb on - strand at 183.866 kb on + strand at 183.867 kb on - strand at 183.867 kb on - strand at 183.930 kb on + strand at 183.936 kb on + strand at 183.936 kb on + strand at 183.937 kb on - strand at 183.937 kb on - strand at 183.937 kb on - strand at 183.967 kb on + strand at 183.967 kb on + strand at 183.967 kb on + strand at 183.967 kb on + strand at 183.979 kb on + strand at 183.979 kb on + strand at 183.979 kb on + strand at 183.979 kb on + strand at 184.035 kb on + strand, within HMPREF1078_RS11315 at 184.077 kb on + strand, within HMPREF1078_RS11315 at 184.078 kb on - strand, within HMPREF1078_RS11315 at 184.081 kb on + strand, within HMPREF1078_RS11315 at 184.082 kb on - strand, within HMPREF1078_RS11315 at 184.082 kb on - strand, within HMPREF1078_RS11315 at 184.191 kb on - strand, within HMPREF1078_RS11315 at 184.209 kb on + strand, within HMPREF1078_RS11315 at 184.318 kb on + strand, within HMPREF1078_RS11315 at 184.318 kb on + strand, within HMPREF1078_RS11315 at 184.318 kb on + strand, within HMPREF1078_RS11315 at 184.320 kb on + strand, within HMPREF1078_RS11315 at 184.344 kb on + strand, within HMPREF1078_RS11315 at 184.344 kb on + strand, within HMPREF1078_RS11315 at 184.344 kb on + strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.352 kb on + strand, within HMPREF1078_RS11315 at 184.396 kb on + strand, within HMPREF1078_RS11315 at 184.396 kb on + strand, within HMPREF1078_RS11315 at 184.441 kb on + strand, within HMPREF1078_RS11315 at 184.442 kb on - strand, within HMPREF1078_RS11315 at 184.549 kb on + strand, within HMPREF1078_RS11315 at 184.549 kb on + strand, within HMPREF1078_RS11315 at 184.549 kb on + strand, within HMPREF1078_RS11315 at 184.550 kb on - strand, within HMPREF1078_RS11315 at 184.551 kb on + strand, within HMPREF1078_RS11315 at 184.593 kb on + strand, within HMPREF1078_RS11315 at 184.593 kb on + strand, within HMPREF1078_RS11315 at 184.594 kb on - strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.657 kb on - strand, within HMPREF1078_RS11315 at 184.657 kb on - strand, within HMPREF1078_RS11315 at 184.657 kb on - strand, within HMPREF1078_RS11315 at 184.719 kb on + strand, within HMPREF1078_RS11315 at 184.731 kb on + strand, within HMPREF1078_RS11315 at 184.748 kb on + strand, within HMPREF1078_RS11315 at 184.749 kb on - strand, within HMPREF1078_RS11315 at 184.835 kb on - strand, within HMPREF1078_RS11315 at 184.856 kb on + strand, within HMPREF1078_RS11315 at 184.865 kb on + strand, within HMPREF1078_RS11315 at 184.865 kb on + strand, within HMPREF1078_RS11315 at 184.865 kb on + strand, within HMPREF1078_RS11315 at 184.865 kb on + strand, within HMPREF1078_RS11315
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 182,530 + HMPREF1078_RS11300 0.76 +0.1 182,548 + HMPREF1078_RS11300 0.79 +0.2 182,600 + HMPREF1078_RS11300 0.86 -0.3 182,604 - HMPREF1078_RS11300 0.87 +0.1 182,639 + +0.4 182,639 + +0.4 182,639 + -0.6 182,640 - -0.5 182,675 - -1.1 182,680 + -0.3 182,681 - +0.6 182,681 - +1.1 182,692 - -0.8 182,713 + -1.0 182,714 - -1.8 182,718 + -0.5 182,719 - +0.4 182,719 - -1.0 182,719 - -3.0 182,722 + -0.0 182,723 - +0.5 182,723 - -0.7 182,724 + +0.0 182,724 + +1.1 183,449 + -2.7 183,509 - HMPREF1078_RS11310 0.12 -1.0 183,517 + HMPREF1078_RS11310 0.14 +0.8 183,517 + HMPREF1078_RS11310 0.14 -2.0 183,517 + HMPREF1078_RS11310 0.14 -0.7 183,517 + HMPREF1078_RS11310 0.14 -0.8 183,518 - HMPREF1078_RS11310 0.15 -0.4 183,518 - HMPREF1078_RS11310 0.15 -1.7 183,540 + HMPREF1078_RS11310 0.20 -1.5 183,540 + HMPREF1078_RS11310 0.20 -1.7 183,637 - HMPREF1078_RS11310 0.44 -2.0 183,726 + HMPREF1078_RS11310 0.65 -1.8 183,736 - HMPREF1078_RS11310 0.68 -2.0 183,762 + HMPREF1078_RS11310 0.74 -0.3 183,791 - HMPREF1078_RS11310 0.81 -1.2 183,805 - HMPREF1078_RS11310 0.84 -1.0 183,805 - HMPREF1078_RS11310 0.84 -2.8 183,864 - -4.2 183,864 - -4.1 183,866 + -2.8 183,867 - -4.3 183,867 - -2.9 183,930 + -2.3 183,936 + -3.5 183,936 + -2.2 183,937 - -2.9 183,937 - -3.7 183,937 - -3.1 183,967 + -4.3 183,967 + -4.6 183,967 + -1.0 183,967 + -2.7 183,979 + -2.3 183,979 + -2.8 183,979 + -3.9 183,979 + -3.0 184,035 + HMPREF1078_RS11315 0.12 -2.8 184,077 + HMPREF1078_RS11315 0.15 -3.2 184,078 - HMPREF1078_RS11315 0.15 -4.1 184,081 + HMPREF1078_RS11315 0.15 -5.4 184,082 - HMPREF1078_RS11315 0.15 -1.3 184,082 - HMPREF1078_RS11315 0.15 -3.2 184,191 - HMPREF1078_RS11315 0.23 -2.9 184,209 + HMPREF1078_RS11315 0.25 -2.9 184,318 + HMPREF1078_RS11315 0.33 -2.2 184,318 + HMPREF1078_RS11315 0.33 -2.1 184,318 + HMPREF1078_RS11315 0.33 -4.7 184,320 + HMPREF1078_RS11315 0.33 -5.3 184,344 + HMPREF1078_RS11315 0.35 -2.9 184,344 + HMPREF1078_RS11315 0.35 -0.4 184,344 + HMPREF1078_RS11315 0.35 -3.1 184,345 - HMPREF1078_RS11315 0.35 -1.7 184,345 - HMPREF1078_RS11315 0.35 -3.8 184,345 - HMPREF1078_RS11315 0.35 -4.3 184,345 - HMPREF1078_RS11315 0.35 -5.7 184,345 - HMPREF1078_RS11315 0.35 -2.7 184,352 + HMPREF1078_RS11315 0.35 -4.1 184,396 + HMPREF1078_RS11315 0.39 -5.1 184,396 + HMPREF1078_RS11315 0.39 -1.4 184,441 + HMPREF1078_RS11315 0.42 -4.2 184,442 - HMPREF1078_RS11315 0.42 -0.4 184,549 + HMPREF1078_RS11315 0.50 +0.3 184,549 + HMPREF1078_RS11315 0.50 -4.8 184,549 + HMPREF1078_RS11315 0.50 -3.2 184,550 - HMPREF1078_RS11315 0.50 -4.3 184,551 + HMPREF1078_RS11315 0.50 -4.4 184,593 + HMPREF1078_RS11315 0.53 -5.5 184,593 + HMPREF1078_RS11315 0.53 -3.0 184,594 - HMPREF1078_RS11315 0.53 -2.6 184,656 + HMPREF1078_RS11315 0.58 -3.7 184,656 + HMPREF1078_RS11315 0.58 -0.2 184,656 + HMPREF1078_RS11315 0.58 -4.4 184,656 + HMPREF1078_RS11315 0.58 -4.0 184,656 + HMPREF1078_RS11315 0.58 -4.1 184,656 + HMPREF1078_RS11315 0.58 -4.8 184,656 + HMPREF1078_RS11315 0.58 -2.3 184,656 + HMPREF1078_RS11315 0.58 -4.9 184,657 - HMPREF1078_RS11315 0.58 -2.5 184,657 - HMPREF1078_RS11315 0.58 -2.3 184,657 - HMPREF1078_RS11315 0.58 -3.2 184,719 + HMPREF1078_RS11315 0.63 +0.1 184,731 + HMPREF1078_RS11315 0.64 -3.2 184,748 + HMPREF1078_RS11315 0.65 -4.0 184,749 - HMPREF1078_RS11315 0.65 -2.3 184,835 - HMPREF1078_RS11315 0.71 -2.5 184,856 + HMPREF1078_RS11315 0.73 -2.2 184,865 + HMPREF1078_RS11315 0.74 -4.3 184,865 + HMPREF1078_RS11315 0.74 -3.7 184,865 + HMPREF1078_RS11315 0.74 -4.0 184,865 + HMPREF1078_RS11315 0.74 -2.6
Or see this region's nucleotide sequence