Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS09490

Experiment: D-Galactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS09480 and HMPREF1078_RS09485 are separated by 17 nucleotidesHMPREF1078_RS09485 and HMPREF1078_RS09490 are separated by 5 nucleotidesHMPREF1078_RS09490 and HMPREF1078_RS09495 are separated by 40 nucleotides HMPREF1078_RS09480: HMPREF1078_RS09480 - AraC family transcriptional regulator, at 480,754 to 481,623 _RS09480 HMPREF1078_RS09485: HMPREF1078_RS09485 - DUF2461 domain-containing protein, at 481,641 to 482,312 _RS09485 HMPREF1078_RS09490: HMPREF1078_RS09490 - PD-(D/E)XK nuclease family protein, at 482,318 to 485,248 _RS09490 HMPREF1078_RS09495: HMPREF1078_RS09495 - L-glyceraldehyde 3-phosphate reductase, at 485,289 to 486,281 _RS09495 Position (kb) 482 483 484 485 486Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 481.330 kb on + strand, within HMPREF1078_RS09480at 481.331 kb on - strand, within HMPREF1078_RS09480at 481.331 kb on - strand, within HMPREF1078_RS09480at 481.346 kb on - strand, within HMPREF1078_RS09480at 481.382 kb on + strand, within HMPREF1078_RS09480at 481.382 kb on + strand, within HMPREF1078_RS09480at 481.524 kb on - strand, within HMPREF1078_RS09480at 481.610 kb on - strandat 481.610 kb on - strandat 481.637 kb on + strandat 481.640 kb on + strandat 481.655 kb on + strandat 481.667 kb on - strandat 481.688 kb on + strandat 481.722 kb on + strand, within HMPREF1078_RS09485at 481.722 kb on + strand, within HMPREF1078_RS09485at 481.745 kb on + strand, within HMPREF1078_RS09485at 481.797 kb on - strand, within HMPREF1078_RS09485at 481.797 kb on - strand, within HMPREF1078_RS09485at 481.798 kb on + strand, within HMPREF1078_RS09485at 481.881 kb on + strand, within HMPREF1078_RS09485at 481.881 kb on + strand, within HMPREF1078_RS09485at 481.882 kb on - strand, within HMPREF1078_RS09485at 481.882 kb on - strand, within HMPREF1078_RS09485at 481.882 kb on - strand, within HMPREF1078_RS09485at 481.883 kb on + strand, within HMPREF1078_RS09485at 481.884 kb on - strand, within HMPREF1078_RS09485at 481.884 kb on - strand, within HMPREF1078_RS09485at 481.916 kb on + strand, within HMPREF1078_RS09485at 481.916 kb on + strand, within HMPREF1078_RS09485at 481.917 kb on - strand, within HMPREF1078_RS09485at 481.917 kb on - strand, within HMPREF1078_RS09485at 481.919 kb on + strand, within HMPREF1078_RS09485at 481.933 kb on - strand, within HMPREF1078_RS09485at 481.956 kb on + strand, within HMPREF1078_RS09485at 481.963 kb on + strand, within HMPREF1078_RS09485at 482.024 kb on - strand, within HMPREF1078_RS09485at 482.025 kb on + strand, within HMPREF1078_RS09485at 482.030 kb on + strand, within HMPREF1078_RS09485at 482.031 kb on - strand, within HMPREF1078_RS09485at 482.035 kb on + strand, within HMPREF1078_RS09485at 482.035 kb on + strand, within HMPREF1078_RS09485at 482.035 kb on + strand, within HMPREF1078_RS09485at 482.035 kb on + strand, within HMPREF1078_RS09485at 482.036 kb on - strand, within HMPREF1078_RS09485at 482.108 kb on - strand, within HMPREF1078_RS09485at 482.153 kb on + strand, within HMPREF1078_RS09485at 482.155 kb on + strand, within HMPREF1078_RS09485at 482.155 kb on + strand, within HMPREF1078_RS09485at 482.155 kb on + strand, within HMPREF1078_RS09485at 482.155 kb on + strand, within HMPREF1078_RS09485at 482.156 kb on - strand, within HMPREF1078_RS09485at 482.156 kb on - strand, within HMPREF1078_RS09485at 482.158 kb on + strand, within HMPREF1078_RS09485at 482.183 kb on - strand, within HMPREF1078_RS09485at 482.183 kb on - strand, within HMPREF1078_RS09485at 482.183 kb on - strand, within HMPREF1078_RS09485at 482.190 kb on - strand, within HMPREF1078_RS09485at 482.295 kb on + strandat 482.296 kb on - strandat 482.296 kb on - strandat 482.296 kb on - strandat 482.316 kb on + strandat 482.539 kb on + strandat 482.540 kb on - strandat 482.606 kb on - strandat 482.736 kb on - strand, within HMPREF1078_RS09490at 482.820 kb on + strand, within HMPREF1078_RS09490at 482.984 kb on - strand, within HMPREF1078_RS09490at 483.251 kb on - strand, within HMPREF1078_RS09490at 483.291 kb on + strand, within HMPREF1078_RS09490at 483.292 kb on - strand, within HMPREF1078_RS09490at 483.292 kb on - strand, within HMPREF1078_RS09490at 483.292 kb on - strand, within HMPREF1078_RS09490at 483.468 kb on + strand, within HMPREF1078_RS09490at 483.500 kb on - strand, within HMPREF1078_RS09490at 483.518 kb on - strand, within HMPREF1078_RS09490at 483.685 kb on - strand, within HMPREF1078_RS09490at 483.785 kb on - strand, within HMPREF1078_RS09490at 484.056 kb on + strand, within HMPREF1078_RS09490at 484.145 kb on - strand, within HMPREF1078_RS09490at 484.487 kb on - strand, within HMPREF1078_RS09490at 484.730 kb on + strand, within HMPREF1078_RS09490at 484.731 kb on - strand, within HMPREF1078_RS09490at 484.731 kb on - strand, within HMPREF1078_RS09490at 484.737 kb on + strand, within HMPREF1078_RS09490at 484.781 kb on - strand, within HMPREF1078_RS09490at 484.913 kb on - strand, within HMPREF1078_RS09490at 484.914 kb on + strand, within HMPREF1078_RS09490at 484.919 kb on - strand, within HMPREF1078_RS09490at 484.993 kb on + strandat 485.014 kb on - strandat 485.016 kb on - strandat 485.203 kb on - strandat 485.235 kb on - strandat 485.266 kb on - strandat 485.286 kb on - strandat 485.286 kb on - strandat 485.288 kb on - strandat 485.296 kb on - strandat 485.300 kb on + strandat 485.301 kb on - strandat 485.364 kb on + strandat 485.365 kb on - strandat 485.541 kb on - strand, within HMPREF1078_RS09495at 485.582 kb on - strand, within HMPREF1078_RS09495at 485.586 kb on - strand, within HMPREF1078_RS09495at 485.586 kb on - strand, within HMPREF1078_RS09495at 485.631 kb on + strand, within HMPREF1078_RS09495at 485.872 kb on + strand, within HMPREF1078_RS09495at 485.888 kb on - strand, within HMPREF1078_RS09495at 485.888 kb on - strand, within HMPREF1078_RS09495at 485.888 kb on - strand, within HMPREF1078_RS09495at 485.888 kb on - strand, within HMPREF1078_RS09495at 485.888 kb on - strand, within HMPREF1078_RS09495at 485.893 kb on - strand, within HMPREF1078_RS09495at 485.936 kb on - strand, within HMPREF1078_RS09495at 485.936 kb on - strand, within HMPREF1078_RS09495at 486.071 kb on - strand, within HMPREF1078_RS09495at 486.071 kb on - strand, within HMPREF1078_RS09495at 486.071 kb on - strand, within HMPREF1078_RS09495at 486.082 kb on + strand, within HMPREF1078_RS09495at 486.087 kb on - strand, within HMPREF1078_RS09495at 486.087 kb on - strand, within HMPREF1078_RS09495at 486.108 kb on - strand, within HMPREF1078_RS09495at 486.131 kb on - strand, within HMPREF1078_RS09495at 486.131 kb on - strand, within HMPREF1078_RS09495at 486.163 kb on - strand, within HMPREF1078_RS09495at 486.163 kb on - strand, within HMPREF1078_RS09495at 486.176 kb on + strand, within HMPREF1078_RS09495at 486.177 kb on - strand, within HMPREF1078_RS09495at 486.234 kb on - strandat 486.236 kb on - strandat 486.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
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481,330 + HMPREF1078_RS09480 0.66 +0.3
481,331 - HMPREF1078_RS09480 0.66 +0.1
481,331 - HMPREF1078_RS09480 0.66 -0.4
481,346 - HMPREF1078_RS09480 0.68 +0.1
481,382 + HMPREF1078_RS09480 0.72 -1.3
481,382 + HMPREF1078_RS09480 0.72 +0.4
481,524 - HMPREF1078_RS09480 0.89 +0.1
481,610 - -0.9
481,610 - -0.3
481,637 + -2.5
481,640 + +0.3
481,655 + -1.1
481,667 - +0.1
481,688 + +0.2
481,722 + HMPREF1078_RS09485 0.12 -0.6
481,722 + HMPREF1078_RS09485 0.12 +1.0
481,745 + HMPREF1078_RS09485 0.15 -0.2
481,797 - HMPREF1078_RS09485 0.23 +0.1
481,797 - HMPREF1078_RS09485 0.23 +0.6
481,798 + HMPREF1078_RS09485 0.23 -0.6
481,881 + HMPREF1078_RS09485 0.36 -1.7
481,881 + HMPREF1078_RS09485 0.36 -0.5
481,882 - HMPREF1078_RS09485 0.36 -0.1
481,882 - HMPREF1078_RS09485 0.36 +0.0
481,882 - HMPREF1078_RS09485 0.36 -0.2
481,883 + HMPREF1078_RS09485 0.36 +0.4
481,884 - HMPREF1078_RS09485 0.36 +0.6
481,884 - HMPREF1078_RS09485 0.36 +0.4
481,916 + HMPREF1078_RS09485 0.41 +1.2
481,916 + HMPREF1078_RS09485 0.41 +1.0
481,917 - HMPREF1078_RS09485 0.41 -0.4
481,917 - HMPREF1078_RS09485 0.41 -0.6
481,919 + HMPREF1078_RS09485 0.41 -0.3
481,933 - HMPREF1078_RS09485 0.43 +0.2
481,956 + HMPREF1078_RS09485 0.47 +1.0
481,963 + HMPREF1078_RS09485 0.48 -1.4
482,024 - HMPREF1078_RS09485 0.57 -0.1
482,025 + HMPREF1078_RS09485 0.57 +0.1
482,030 + HMPREF1078_RS09485 0.58 -0.7
482,031 - HMPREF1078_RS09485 0.58 -0.8
482,035 + HMPREF1078_RS09485 0.59 +0.9
482,035 + HMPREF1078_RS09485 0.59 -0.7
482,035 + HMPREF1078_RS09485 0.59 -0.2
482,035 + HMPREF1078_RS09485 0.59 +0.9
482,036 - HMPREF1078_RS09485 0.59 -0.1
482,108 - HMPREF1078_RS09485 0.69 +1.6
482,153 + HMPREF1078_RS09485 0.76 -2.2
482,155 + HMPREF1078_RS09485 0.76 +0.4
482,155 + HMPREF1078_RS09485 0.76 -1.7
482,155 + HMPREF1078_RS09485 0.76 +0.0
482,155 + HMPREF1078_RS09485 0.76 +0.7
482,156 - HMPREF1078_RS09485 0.77 -0.9
482,156 - HMPREF1078_RS09485 0.77 +0.4
482,158 + HMPREF1078_RS09485 0.77 -0.2
482,183 - HMPREF1078_RS09485 0.81 +0.4
482,183 - HMPREF1078_RS09485 0.81 +0.1
482,183 - HMPREF1078_RS09485 0.81 +0.5
482,190 - HMPREF1078_RS09485 0.82 -0.4
482,295 + -0.4
482,296 - -0.1
482,296 - +1.3
482,296 - -0.1
482,316 + -0.3
482,539 + +2.4
482,540 - -1.6
482,606 - -0.1
482,736 - HMPREF1078_RS09490 0.14 -1.6
482,820 + HMPREF1078_RS09490 0.17 +0.1
482,984 - HMPREF1078_RS09490 0.23 +0.4
483,251 - HMPREF1078_RS09490 0.32 -0.1
483,291 + HMPREF1078_RS09490 0.33 +0.4
483,292 - HMPREF1078_RS09490 0.33 -0.7
483,292 - HMPREF1078_RS09490 0.33 +0.4
483,292 - HMPREF1078_RS09490 0.33 +0.1
483,468 + HMPREF1078_RS09490 0.39 -0.1
483,500 - HMPREF1078_RS09490 0.40 +2.4
483,518 - HMPREF1078_RS09490 0.41 +1.4
483,685 - HMPREF1078_RS09490 0.47 -0.1
483,785 - HMPREF1078_RS09490 0.50 -0.4
484,056 + HMPREF1078_RS09490 0.59 +0.4
484,145 - HMPREF1078_RS09490 0.62 -0.9
484,487 - HMPREF1078_RS09490 0.74 -0.7
484,730 + HMPREF1078_RS09490 0.82 +0.9
484,731 - HMPREF1078_RS09490 0.82 +0.9
484,731 - HMPREF1078_RS09490 0.82 +0.1
484,737 + HMPREF1078_RS09490 0.83 -0.4
484,781 - HMPREF1078_RS09490 0.84 +0.1
484,913 - HMPREF1078_RS09490 0.89 +0.1
484,914 + HMPREF1078_RS09490 0.89 +0.9
484,919 - HMPREF1078_RS09490 0.89 -2.0
484,993 + +1.4
485,014 - -0.1
485,016 - +0.1
485,203 - +2.4
485,235 - +0.9
485,266 - +0.4
485,286 - -0.8
485,286 - +1.7
485,288 - +0.6
485,296 - +1.0
485,300 + -0.6
485,301 - -0.6
485,364 + -0.4
485,365 - +0.4
485,541 - HMPREF1078_RS09495 0.25 -0.1
485,582 - HMPREF1078_RS09495 0.30 -1.8
485,586 - HMPREF1078_RS09495 0.30 -0.7
485,586 - HMPREF1078_RS09495 0.30 -0.1
485,631 + HMPREF1078_RS09495 0.34 +0.4
485,872 + HMPREF1078_RS09495 0.59 -0.1
485,888 - HMPREF1078_RS09495 0.60 -0.5
485,888 - HMPREF1078_RS09495 0.60 -0.7
485,888 - HMPREF1078_RS09495 0.60 -0.5
485,888 - HMPREF1078_RS09495 0.60 +2.4
485,888 - HMPREF1078_RS09495 0.60 -0.6
485,893 - HMPREF1078_RS09495 0.61 -0.5
485,936 - HMPREF1078_RS09495 0.65 -0.2
485,936 - HMPREF1078_RS09495 0.65 +1.4
486,071 - HMPREF1078_RS09495 0.79 -3.0
486,071 - HMPREF1078_RS09495 0.79 +0.3
486,071 - HMPREF1078_RS09495 0.79 -0.1
486,082 + HMPREF1078_RS09495 0.80 -0.6
486,087 - HMPREF1078_RS09495 0.80 +0.1
486,087 - HMPREF1078_RS09495 0.80 +0.5
486,108 - HMPREF1078_RS09495 0.82 -0.8
486,131 - HMPREF1078_RS09495 0.85 -1.0
486,131 - HMPREF1078_RS09495 0.85 -3.9
486,163 - HMPREF1078_RS09495 0.88 +0.1
486,163 - HMPREF1078_RS09495 0.88 -0.1
486,176 + HMPREF1078_RS09495 0.89 +0.9
486,177 - HMPREF1078_RS09495 0.89 -0.0
486,234 - +1.0
486,236 - -0.5
486,236 - -0.1

Or see this region's nucleotide sequence