Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07310 and HMPREF1078_RS07315 are separated by 59 nucleotides HMPREF1078_RS07315 and HMPREF1078_RS07320 are separated by 106 nucleotides
HMPREF1078_RS07310: HMPREF1078_RS07310 - methionine--tRNA ligase, at 890,537 to 892,576
_RS07310
HMPREF1078_RS07315: HMPREF1078_RS07315 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 892,636 to 893,802
_RS07315
HMPREF1078_RS07320: HMPREF1078_RS07320 - Gfo/Idh/MocA family oxidoreductase, at 893,909 to 894,925
_RS07320
Position (kb) 892
893
894 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.230 kb on - strand, within HMPREF1078_RS07310 at 892.551 kb on + strand at 892.551 kb on + strand at 892.610 kb on + strand at 892.629 kb on + strand at 892.630 kb on - strand at 892.630 kb on - strand at 892.632 kb on + strand at 892.632 kb on + strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.634 kb on + strand at 892.634 kb on + strand at 892.635 kb on - strand at 892.635 kb on - strand at 892.653 kb on - strand at 892.653 kb on - strand at 892.678 kb on + strand at 892.679 kb on - strand at 892.679 kb on - strand at 892.787 kb on - strand, within HMPREF1078_RS07315 at 892.801 kb on + strand, within HMPREF1078_RS07315 at 892.801 kb on + strand, within HMPREF1078_RS07315 at 892.886 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.901 kb on - strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.977 kb on + strand, within HMPREF1078_RS07315 at 892.978 kb on - strand, within HMPREF1078_RS07315 at 893.074 kb on - strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.105 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.317 kb on + strand, within HMPREF1078_RS07315 at 893.318 kb on - strand, within HMPREF1078_RS07315 at 893.507 kb on - strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.528 kb on + strand, within HMPREF1078_RS07315 at 893.593 kb on + strand, within HMPREF1078_RS07315 at 893.635 kb on - strand, within HMPREF1078_RS07315 at 893.635 kb on - strand, within HMPREF1078_RS07315 at 893.646 kb on - strand, within HMPREF1078_RS07315 at 893.700 kb on + strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.736 kb on + strand at 893.821 kb on - strand at 893.835 kb on + strand at 894.050 kb on + strand, within HMPREF1078_RS07320 at 894.084 kb on + strand, within HMPREF1078_RS07320 at 894.085 kb on - strand, within HMPREF1078_RS07320 at 894.114 kb on + strand, within HMPREF1078_RS07320 at 894.114 kb on + strand, within HMPREF1078_RS07320 at 894.125 kb on - strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.237 kb on - strand, within HMPREF1078_RS07320 at 894.331 kb on + strand, within HMPREF1078_RS07320 at 894.337 kb on - strand, within HMPREF1078_RS07320 at 894.347 kb on + strand, within HMPREF1078_RS07320 at 894.348 kb on - strand, within HMPREF1078_RS07320 at 894.349 kb on + strand, within HMPREF1078_RS07320 at 894.350 kb on - strand, within HMPREF1078_RS07320 at 894.390 kb on - strand, within HMPREF1078_RS07320 at 894.394 kb on + strand, within HMPREF1078_RS07320 at 894.472 kb on + strand, within HMPREF1078_RS07320 at 894.472 kb on + strand, within HMPREF1078_RS07320 at 894.473 kb on - strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.477 kb on - strand, within HMPREF1078_RS07320 at 894.492 kb on + strand, within HMPREF1078_RS07320 at 894.609 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.692 kb on + strand, within HMPREF1078_RS07320 at 894.693 kb on - strand, within HMPREF1078_RS07320 at 894.694 kb on + strand, within HMPREF1078_RS07320 at 894.695 kb on - strand, within HMPREF1078_RS07320 at 894.695 kb on - strand, within HMPREF1078_RS07320 at 894.780 kb on - strand, within HMPREF1078_RS07320 at 894.781 kb on - strand, within HMPREF1078_RS07320 at 894.782 kb on - strand, within HMPREF1078_RS07320
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 892,229 + HMPREF1078_RS07310 0.83 -0.0 892,229 + HMPREF1078_RS07310 0.83 +0.7 892,229 + HMPREF1078_RS07310 0.83 -0.4 892,229 + HMPREF1078_RS07310 0.83 +0.8 892,229 + HMPREF1078_RS07310 0.83 +0.4 892,230 - HMPREF1078_RS07310 0.83 -2.2 892,551 + -3.7 892,551 + -1.9 892,610 + -0.6 892,629 + -1.2 892,630 - -2.7 892,630 - -2.7 892,632 + -3.8 892,632 + -3.5 892,633 - -4.3 892,633 - -4.5 892,633 - -2.9 892,633 - -2.2 892,633 - -2.6 892,634 + -3.7 892,634 + -1.4 892,635 - -0.4 892,635 - -1.9 892,653 - -4.0 892,653 - -1.6 892,678 + -2.4 892,679 - -2.0 892,679 - -3.5 892,787 - HMPREF1078_RS07315 0.13 -1.8 892,801 + HMPREF1078_RS07315 0.14 -0.1 892,801 + HMPREF1078_RS07315 0.14 -3.1 892,886 + HMPREF1078_RS07315 0.21 -2.6 892,900 + HMPREF1078_RS07315 0.23 -1.2 892,900 + HMPREF1078_RS07315 0.23 -2.4 892,900 + HMPREF1078_RS07315 0.23 -3.4 892,901 - HMPREF1078_RS07315 0.23 -2.9 892,902 + HMPREF1078_RS07315 0.23 -2.3 892,902 + HMPREF1078_RS07315 0.23 +0.8 892,902 + HMPREF1078_RS07315 0.23 -0.2 892,903 - HMPREF1078_RS07315 0.23 -2.5 892,903 - HMPREF1078_RS07315 0.23 -4.6 892,903 - HMPREF1078_RS07315 0.23 -1.5 892,903 - HMPREF1078_RS07315 0.23 +0.1 892,969 - HMPREF1078_RS07315 0.29 -2.1 892,969 - HMPREF1078_RS07315 0.29 -2.7 892,977 + HMPREF1078_RS07315 0.29 -2.7 892,978 - HMPREF1078_RS07315 0.29 -1.6 893,074 - HMPREF1078_RS07315 0.38 -2.6 893,101 + HMPREF1078_RS07315 0.40 -3.4 893,101 + HMPREF1078_RS07315 0.40 -3.0 893,101 + HMPREF1078_RS07315 0.40 -3.3 893,101 + HMPREF1078_RS07315 0.40 -2.4 893,101 + HMPREF1078_RS07315 0.40 -1.9 893,101 + HMPREF1078_RS07315 0.40 -5.0 893,101 - HMPREF1078_RS07315 0.40 -0.2 893,102 - HMPREF1078_RS07315 0.40 -1.2 893,102 - HMPREF1078_RS07315 0.40 -1.2 893,102 - HMPREF1078_RS07315 0.40 -2.8 893,105 + HMPREF1078_RS07315 0.40 -3.3 893,187 + HMPREF1078_RS07315 0.47 -3.1 893,187 + HMPREF1078_RS07315 0.47 -3.1 893,317 + HMPREF1078_RS07315 0.58 -1.5 893,318 - HMPREF1078_RS07315 0.58 -1.9 893,507 - HMPREF1078_RS07315 0.75 -2.5 893,517 + HMPREF1078_RS07315 0.75 -2.2 893,517 + HMPREF1078_RS07315 0.75 -3.4 893,528 + HMPREF1078_RS07315 0.76 -1.8 893,593 + HMPREF1078_RS07315 0.82 -4.5 893,635 - HMPREF1078_RS07315 0.86 -3.2 893,635 - HMPREF1078_RS07315 0.86 -3.7 893,646 - HMPREF1078_RS07315 0.87 -1.8 893,700 + -2.4 893,735 - -1.8 893,735 - -1.2 893,735 - -0.4 893,735 - -3.0 893,736 + -2.2 893,821 - -2.2 893,835 + +0.7 894,050 + HMPREF1078_RS07320 0.14 -1.0 894,084 + HMPREF1078_RS07320 0.17 -1.2 894,085 - HMPREF1078_RS07320 0.17 -3.2 894,114 + HMPREF1078_RS07320 0.20 -0.4 894,114 + HMPREF1078_RS07320 0.20 -2.7 894,125 - HMPREF1078_RS07320 0.21 -1.7 894,236 + HMPREF1078_RS07320 0.32 -2.9 894,236 + HMPREF1078_RS07320 0.32 -2.5 894,236 + HMPREF1078_RS07320 0.32 -1.7 894,236 + HMPREF1078_RS07320 0.32 -3.3 894,237 - HMPREF1078_RS07320 0.32 -0.7 894,331 + HMPREF1078_RS07320 0.41 -2.9 894,337 - HMPREF1078_RS07320 0.42 -3.6 894,347 + HMPREF1078_RS07320 0.43 -4.4 894,348 - HMPREF1078_RS07320 0.43 -2.6 894,349 + HMPREF1078_RS07320 0.43 -3.2 894,350 - HMPREF1078_RS07320 0.43 -2.1 894,390 - HMPREF1078_RS07320 0.47 -1.4 894,394 + HMPREF1078_RS07320 0.48 -2.8 894,472 + HMPREF1078_RS07320 0.55 -2.4 894,472 + HMPREF1078_RS07320 0.55 -2.2 894,473 - HMPREF1078_RS07320 0.55 -2.6 894,476 + HMPREF1078_RS07320 0.56 -1.5 894,476 + HMPREF1078_RS07320 0.56 -3.4 894,476 + HMPREF1078_RS07320 0.56 -2.3 894,477 - HMPREF1078_RS07320 0.56 -3.9 894,492 + HMPREF1078_RS07320 0.57 -3.0 894,609 - HMPREF1078_RS07320 0.69 -2.2 894,647 - HMPREF1078_RS07320 0.73 -1.6 894,647 - HMPREF1078_RS07320 0.73 -3.2 894,647 - HMPREF1078_RS07320 0.73 -3.6 894,692 + HMPREF1078_RS07320 0.77 -2.2 894,693 - HMPREF1078_RS07320 0.77 -1.6 894,694 + HMPREF1078_RS07320 0.77 -5.0 894,695 - HMPREF1078_RS07320 0.77 -2.9 894,695 - HMPREF1078_RS07320 0.77 -2.5 894,780 - HMPREF1078_RS07320 0.86 -3.5 894,781 - HMPREF1078_RS07320 0.86 -2.3 894,782 - HMPREF1078_RS07320 0.86 -4.0
Or see this region's nucleotide sequence