Strain Fitness in Variovorax sp. SCN45 around GFF3670

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3669 and GFF3670 overlap by 16 nucleotidesGFF3670 and GFF3671 are separated by 37 nucleotides GFF3669 - Two-component system response regulator protein, at 170,324 to 171,694 GFF3669 GFF3670 - Two-component system sensor histidine kinase, at 171,679 to 173,139 GFF3670 GFF3671 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 173,177 to 174,709 GFF3671 Position (kb) 171 172 173 174Strain fitness (log2 ratio) -2 -1 0 1 2at 170.799 kb on + strand, within GFF3669at 171.171 kb on + strand, within GFF3669at 172.398 kb on - strand, within GFF3670at 172.398 kb on - strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.832 kb on + strand, within GFF3670at 172.833 kb on - strand, within GFF3670at 172.833 kb on - strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.973 kb on + strand, within GFF3670at 172.973 kb on + strand, within GFF3670at 173.051 kb on + strandat 173.051 kb on + strandat 173.451 kb on + strand, within GFF3671at 173.451 kb on + strand, within GFF3671at 173.451 kb on + strand, within GFF3671at 173.451 kb on + strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.610 kb on + strand, within GFF3671at 173.611 kb on - strand, within GFF3671at 173.802 kb on + strand, within GFF3671at 173.803 kb on - strand, within GFF3671at 173.943 kb on + strand, within GFF3671at 173.943 kb on + strand, within GFF3671at 173.944 kb on - strand, within GFF3671at 173.944 kb on - strand, within GFF3671at 174.000 kb on + strand, within GFF3671at 174.000 kb on + strand, within GFF3671at 174.001 kb on - strand, within GFF3671at 174.001 kb on - strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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170,799 + GFF3669 0.35 -0.1
171,171 + GFF3669 0.62 +1.3
172,398 - GFF3670 0.49 +0.3
172,398 - GFF3670 0.49 -0.6
172,823 + GFF3670 0.78 +0.0
172,823 + GFF3670 0.78 -0.6
172,823 + GFF3670 0.78 -0.5
172,823 + GFF3670 0.78 +1.3
172,823 + GFF3670 0.78 -0.5
172,823 + GFF3670 0.78 -0.5
172,823 + GFF3670 0.78 +0.4
172,823 + GFF3670 0.78 -0.1
172,823 + GFF3670 0.78 -0.4
172,823 + GFF3670 0.78 +0.2
172,824 - GFF3670 0.78 -0.4
172,824 - GFF3670 0.78 -0.1
172,824 - GFF3670 0.78 +0.3
172,824 - GFF3670 0.78 -0.3
172,824 - GFF3670 0.78 -0.1
172,824 - GFF3670 0.78 +0.9
172,824 - GFF3670 0.78 -0.0
172,832 + GFF3670 0.79 -1.1
172,833 - GFF3670 0.79 +0.7
172,833 - GFF3670 0.79 -0.2
172,838 + GFF3670 0.79 -0.1
172,838 + GFF3670 0.79 -1.5
172,838 + GFF3670 0.79 +1.9
172,838 + GFF3670 0.79 +0.6
172,838 + GFF3670 0.79 +1.1
172,838 + GFF3670 0.79 -0.4
172,838 + GFF3670 0.79 +0.1
172,839 - GFF3670 0.79 -0.3
172,839 - GFF3670 0.79 +1.2
172,839 - GFF3670 0.79 +0.3
172,839 - GFF3670 0.79 +0.0
172,839 - GFF3670 0.79 -0.0
172,839 - GFF3670 0.79 +0.3
172,973 + GFF3670 0.89 +1.1
172,973 + GFF3670 0.89 -1.4
173,051 + +0.9
173,051 + +0.3
173,451 + GFF3671 0.18 -1.5
173,451 + GFF3671 0.18 -0.6
173,451 + GFF3671 0.18 -0.2
173,451 + GFF3671 0.18 +0.1
173,452 - GFF3671 0.18 -0.1
173,452 - GFF3671 0.18 -1.3
173,452 - GFF3671 0.18 -0.1
173,452 - GFF3671 0.18 +1.9
173,452 - GFF3671 0.18 -1.7
173,610 + GFF3671 0.28 -0.4
173,611 - GFF3671 0.28 -0.8
173,802 + GFF3671 0.41 +0.4
173,803 - GFF3671 0.41 +0.5
173,943 + GFF3671 0.50 -1.1
173,943 + GFF3671 0.50 +2.2
173,944 - GFF3671 0.50 -0.9
173,944 - GFF3671 0.50 -1.6
174,000 + GFF3671 0.54 -0.4
174,000 + GFF3671 0.54 -1.1
174,001 - GFF3671 0.54 -0.1
174,001 - GFF3671 0.54 +0.5
174,087 + GFF3671 0.59 +0.1
174,087 + GFF3671 0.59 -0.9
174,087 + GFF3671 0.59 -0.1
174,126 + GFF3671 0.62 -1.0
174,126 + GFF3671 0.62 +0.6
174,126 + GFF3671 0.62 +0.3
174,126 + GFF3671 0.62 -0.5
174,126 + GFF3671 0.62 +0.1
174,126 + GFF3671 0.62 -0.2
174,127 - GFF3671 0.62 +0.7
174,127 - GFF3671 0.62 -0.9
174,127 - GFF3671 0.62 -0.5
174,127 - GFF3671 0.62 -0.0
174,127 - GFF3671 0.62 +0.5
174,127 - GFF3671 0.62 -0.0
174,127 - GFF3671 0.62 +1.3
174,132 + GFF3671 0.62 -0.6
174,132 + GFF3671 0.62 -0.3
174,132 + GFF3671 0.62 -0.4
174,132 + GFF3671 0.62 -0.6
174,132 + GFF3671 0.62 -0.4
174,133 - GFF3671 0.62 -2.5
174,133 - GFF3671 0.62 -0.5
174,133 - GFF3671 0.62 +0.8
174,133 - GFF3671 0.62 -0.3
174,133 - GFF3671 0.62 +0.3
174,133 - GFF3671 0.62 -0.7

Or see this region's nucleotide sequence