Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04453 and MPMX19_04454 are separated by 86 nucleotides MPMX19_04454 and MPMX19_04455 are separated by 433 nucleotides MPMX19_04455 and MPMX19_04456 are separated by 99 nucleotides
MPMX19_04453: MPMX19_04453 - Aminoalkylphosphonate N-acetyltransferase, at 821,092 to 821,535
_04453
MPMX19_04454: MPMX19_04454 - hypothetical protein, at 821,622 to 821,837
_04454
MPMX19_04455: MPMX19_04455 - Arabinose 5-phosphate isomerase KdsD, at 822,271 to 822,726
_04455
MPMX19_04456: MPMX19_04456 - Histone deacetylase-like amidohydrolase, at 822,826 to 823,755
_04456
Position (kb) 822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.323 kb on + strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.324 kb on - strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.329 kb on + strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.330 kb on - strand, within MPMX19_04453 at 821.368 kb on + strand, within MPMX19_04453 at 821.368 kb on + strand, within MPMX19_04453 at 821.368 kb on + strand, within MPMX19_04453 at 821.368 kb on + strand, within MPMX19_04453 at 821.368 kb on + strand, within MPMX19_04453 at 821.368 kb on + strand, within MPMX19_04453 at 821.368 kb on + strand, within MPMX19_04453 at 821.369 kb on - strand, within MPMX19_04453 at 821.369 kb on - strand, within MPMX19_04453 at 821.369 kb on - strand, within MPMX19_04453 at 821.369 kb on - strand, within MPMX19_04453 at 821.479 kb on + strand, within MPMX19_04453 at 821.479 kb on + strand, within MPMX19_04453 at 821.479 kb on + strand, within MPMX19_04453 at 821.479 kb on + strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.480 kb on - strand, within MPMX19_04453 at 821.547 kb on + strand at 821.548 kb on - strand at 821.548 kb on - strand at 821.548 kb on - strand at 821.548 kb on - strand at 821.548 kb on - strand at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.777 kb on + strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.778 kb on - strand, within MPMX19_04454 at 821.779 kb on + strand, within MPMX19_04454 at 821.779 kb on + strand, within MPMX19_04454 at 821.779 kb on + strand, within MPMX19_04454 at 821.779 kb on + strand, within MPMX19_04454 at 821.779 kb on + strand, within MPMX19_04454 at 821.780 kb on - strand, within MPMX19_04454 at 821.780 kb on - strand, within MPMX19_04454 at 821.780 kb on - strand, within MPMX19_04454 at 822.045 kb on + strand at 822.045 kb on + strand at 822.045 kb on + strand at 822.046 kb on - strand at 822.088 kb on + strand at 822.088 kb on + strand at 822.088 kb on + strand at 822.088 kb on + strand at 822.088 kb on + strand at 822.089 kb on - strand at 822.089 kb on - strand at 822.089 kb on - strand at 822.089 kb on - strand at 822.089 kb on - strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.715 kb on + strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.716 kb on - strand at 822.747 kb on + strand at 822.748 kb on - strand at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.051 kb on + strand, within MPMX19_04456 at 823.051 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.394 kb on - strand, within MPMX19_04456 at 823.462 kb on + strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.693 kb on + strand at 823.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 821,323 + MPMX19_04453 0.52 -0.8 821,323 + MPMX19_04453 0.52 -0.6 821,323 + MPMX19_04453 0.52 -0.2 821,323 + MPMX19_04453 0.52 -0.3 821,323 + MPMX19_04453 0.52 -0.7 821,323 + MPMX19_04453 0.52 -1.3 821,323 + MPMX19_04453 0.52 +0.3 821,323 + MPMX19_04453 0.52 -1.4 821,323 + MPMX19_04453 0.52 -0.1 821,323 + MPMX19_04453 0.52 -0.5 821,324 - MPMX19_04453 0.52 -0.1 821,324 - MPMX19_04453 0.52 -0.1 821,324 - MPMX19_04453 0.52 -2.1 821,324 - MPMX19_04453 0.52 -0.2 821,324 - MPMX19_04453 0.52 -0.4 821,324 - MPMX19_04453 0.52 -0.6 821,324 - MPMX19_04453 0.52 -1.6 821,324 - MPMX19_04453 0.52 +0.0 821,324 - MPMX19_04453 0.52 -1.6 821,324 - MPMX19_04453 0.52 -1.0 821,329 + MPMX19_04453 0.53 -1.1 821,329 + MPMX19_04453 0.53 -0.1 821,329 + MPMX19_04453 0.53 -0.8 821,329 + MPMX19_04453 0.53 -0.0 821,329 + MPMX19_04453 0.53 +0.1 821,329 + MPMX19_04453 0.53 -1.6 821,329 + MPMX19_04453 0.53 +0.3 821,329 + MPMX19_04453 0.53 +0.4 821,329 + MPMX19_04453 0.53 +2.4 821,329 + MPMX19_04453 0.53 -1.4 821,329 + MPMX19_04453 0.53 +0.3 821,329 + MPMX19_04453 0.53 -0.4 821,329 + MPMX19_04453 0.53 -2.1 821,329 + MPMX19_04453 0.53 -0.5 821,329 + MPMX19_04453 0.53 -0.5 821,329 + MPMX19_04453 0.53 -1.3 821,329 + MPMX19_04453 0.53 +1.6 821,329 + MPMX19_04453 0.53 -0.2 821,329 + MPMX19_04453 0.53 -1.6 821,329 + MPMX19_04453 0.53 +0.1 821,329 + MPMX19_04453 0.53 -1.2 821,329 + MPMX19_04453 0.53 +0.0 821,329 + MPMX19_04453 0.53 -0.0 821,329 + MPMX19_04453 0.53 +0.2 821,329 + MPMX19_04453 0.53 -1.0 821,329 + MPMX19_04453 0.53 +0.3 821,329 + MPMX19_04453 0.53 -1.2 821,329 + MPMX19_04453 0.53 +0.0 821,329 + MPMX19_04453 0.53 -0.4 821,329 + MPMX19_04453 0.53 -2.3 821,329 + MPMX19_04453 0.53 -0.5 821,329 + MPMX19_04453 0.53 +0.0 821,329 + MPMX19_04453 0.53 +0.7 821,329 + MPMX19_04453 0.53 +0.4 821,329 + MPMX19_04453 0.53 +0.2 821,330 - MPMX19_04453 0.54 +0.5 821,330 - MPMX19_04453 0.54 -1.8 821,330 - MPMX19_04453 0.54 +0.2 821,330 - MPMX19_04453 0.54 -0.3 821,330 - MPMX19_04453 0.54 -2.3 821,330 - MPMX19_04453 0.54 -0.5 821,330 - MPMX19_04453 0.54 -1.4 821,330 - MPMX19_04453 0.54 -2.6 821,330 - MPMX19_04453 0.54 +0.3 821,330 - MPMX19_04453 0.54 +1.1 821,330 - MPMX19_04453 0.54 -0.2 821,330 - MPMX19_04453 0.54 -0.4 821,330 - MPMX19_04453 0.54 -0.9 821,330 - MPMX19_04453 0.54 -0.8 821,330 - MPMX19_04453 0.54 -3.1 821,330 - MPMX19_04453 0.54 +1.1 821,330 - MPMX19_04453 0.54 -2.0 821,330 - MPMX19_04453 0.54 -0.1 821,330 - MPMX19_04453 0.54 +0.2 821,330 - MPMX19_04453 0.54 -0.7 821,330 - MPMX19_04453 0.54 -0.2 821,330 - MPMX19_04453 0.54 -0.2 821,330 - MPMX19_04453 0.54 +0.3 821,330 - MPMX19_04453 0.54 -1.4 821,330 - MPMX19_04453 0.54 +0.9 821,330 - MPMX19_04453 0.54 -0.3 821,330 - MPMX19_04453 0.54 -0.6 821,330 - MPMX19_04453 0.54 -0.7 821,330 - MPMX19_04453 0.54 -0.7 821,330 - MPMX19_04453 0.54 +0.7 821,330 - MPMX19_04453 0.54 +1.2 821,330 - MPMX19_04453 0.54 -2.7 821,368 + MPMX19_04453 0.62 +0.4 821,368 + MPMX19_04453 0.62 -0.6 821,368 + MPMX19_04453 0.62 -0.6 821,368 + MPMX19_04453 0.62 -1.6 821,368 + MPMX19_04453 0.62 -0.7 821,368 + MPMX19_04453 0.62 -2.2 821,368 + MPMX19_04453 0.62 +0.4 821,369 - MPMX19_04453 0.62 -1.6 821,369 - MPMX19_04453 0.62 -0.7 821,369 - MPMX19_04453 0.62 -0.3 821,369 - MPMX19_04453 0.62 +0.2 821,479 + MPMX19_04453 0.87 -0.2 821,479 + MPMX19_04453 0.87 +2.0 821,479 + MPMX19_04453 0.87 -0.3 821,479 + MPMX19_04453 0.87 -0.7 821,480 - MPMX19_04453 0.87 -0.5 821,480 - MPMX19_04453 0.87 -0.9 821,480 - MPMX19_04453 0.87 -0.2 821,480 - MPMX19_04453 0.87 +0.6 821,480 - MPMX19_04453 0.87 -0.6 821,480 - MPMX19_04453 0.87 -1.6 821,480 - MPMX19_04453 0.87 -1.0 821,480 - MPMX19_04453 0.87 +0.5 821,480 - MPMX19_04453 0.87 -0.2 821,480 - MPMX19_04453 0.87 -2.1 821,480 - MPMX19_04453 0.87 -0.8 821,547 + +0.3 821,548 - -0.6 821,548 - -0.6 821,548 - +1.6 821,548 - +1.3 821,548 - -0.3 821,777 + MPMX19_04454 0.72 -0.7 821,777 + MPMX19_04454 0.72 -0.2 821,777 + MPMX19_04454 0.72 +0.0 821,777 + MPMX19_04454 0.72 -1.2 821,777 + MPMX19_04454 0.72 -0.1 821,777 + MPMX19_04454 0.72 +0.3 821,777 + MPMX19_04454 0.72 -3.0 821,777 + MPMX19_04454 0.72 -0.5 821,777 + MPMX19_04454 0.72 -0.3 821,777 + MPMX19_04454 0.72 -0.4 821,778 - MPMX19_04454 0.72 +0.4 821,778 - MPMX19_04454 0.72 -1.4 821,778 - MPMX19_04454 0.72 +0.3 821,778 - MPMX19_04454 0.72 +1.0 821,778 - MPMX19_04454 0.72 +0.6 821,778 - MPMX19_04454 0.72 +0.6 821,778 - MPMX19_04454 0.72 -0.6 821,778 - MPMX19_04454 0.72 +1.1 821,778 - MPMX19_04454 0.72 +0.4 821,778 - MPMX19_04454 0.72 -0.5 821,778 - MPMX19_04454 0.72 +0.4 821,778 - MPMX19_04454 0.72 +0.2 821,779 + MPMX19_04454 0.73 +0.5 821,779 + MPMX19_04454 0.73 -1.8 821,779 + MPMX19_04454 0.73 -0.7 821,779 + MPMX19_04454 0.73 +1.0 821,779 + MPMX19_04454 0.73 -0.9 821,780 - MPMX19_04454 0.73 -0.2 821,780 - MPMX19_04454 0.73 +0.9 821,780 - MPMX19_04454 0.73 -1.6 822,045 + +1.6 822,045 + -0.1 822,045 + -0.7 822,046 - +1.0 822,088 + -1.0 822,088 + +0.5 822,088 + -1.0 822,088 + +0.3 822,088 + +0.4 822,089 - +0.1 822,089 - +0.1 822,089 - +0.6 822,089 - +0.2 822,089 - -0.1 822,715 + -0.1 822,715 + -1.7 822,715 + -0.1 822,715 + +0.8 822,715 + +0.3 822,715 + -1.3 822,715 + +0.1 822,715 + -1.3 822,715 + -2.4 822,715 + -0.9 822,715 + -0.3 822,715 + -0.7 822,715 + +0.1 822,716 - -0.8 822,716 - +0.0 822,716 - -1.4 822,716 - -0.4 822,716 - +0.3 822,716 - +0.3 822,716 - -0.7 822,716 - +0.6 822,716 - -0.2 822,716 - -0.2 822,716 - +0.1 822,716 - -1.0 822,716 - -0.6 822,716 - -1.3 822,747 + -1.3 822,748 - +0.4 823,012 + MPMX19_04456 0.20 +1.2 823,012 + MPMX19_04456 0.20 +1.2 823,012 + MPMX19_04456 0.20 +0.9 823,012 + MPMX19_04456 0.20 -1.0 823,012 + MPMX19_04456 0.20 +0.4 823,012 + MPMX19_04456 0.20 +0.4 823,012 + MPMX19_04456 0.20 -0.9 823,012 + MPMX19_04456 0.20 +1.0 823,012 + MPMX19_04456 0.20 -2.4 823,012 + MPMX19_04456 0.20 +0.0 823,013 - MPMX19_04456 0.20 -0.3 823,013 - MPMX19_04456 0.20 +0.6 823,013 - MPMX19_04456 0.20 -1.1 823,013 - MPMX19_04456 0.20 +0.2 823,013 - MPMX19_04456 0.20 +0.7 823,013 - MPMX19_04456 0.20 -0.1 823,013 - MPMX19_04456 0.20 +0.7 823,013 - MPMX19_04456 0.20 +0.1 823,013 - MPMX19_04456 0.20 -0.9 823,013 - MPMX19_04456 0.20 -1.7 823,013 - MPMX19_04456 0.20 -2.5 823,013 - MPMX19_04456 0.20 +0.1 823,051 + MPMX19_04456 0.24 -0.2 823,051 + MPMX19_04456 0.24 +0.3 823,393 + MPMX19_04456 0.61 +0.3 823,393 + MPMX19_04456 0.61 +0.4 823,393 + MPMX19_04456 0.61 +0.0 823,394 - MPMX19_04456 0.61 +0.9 823,462 + MPMX19_04456 0.68 -0.1 823,463 - MPMX19_04456 0.68 +0.0 823,463 - MPMX19_04456 0.68 -0.5 823,463 - MPMX19_04456 0.68 +1.0 823,463 - MPMX19_04456 0.68 +0.3 823,463 - MPMX19_04456 0.68 +0.3 823,463 - MPMX19_04456 0.68 -0.7 823,693 + -0.6 823,693 + -0.4
Or see this region's nucleotide sequence