Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03317 and MPMX19_03318 are separated by 62 nucleotides MPMX19_03318 and MPMX19_03319 are separated by 36 nucleotides
MPMX19_03317: MPMX19_03317 - hypothetical protein, at 665,185 to 666,366
_03317
MPMX19_03318: MPMX19_03318 - hypothetical protein, at 666,429 to 667,916
_03318
MPMX19_03319: MPMX19_03319 - hypothetical protein, at 667,953 to 669,902
_03319
Position (kb) 666
667
668 Strain fitness (log2 ratio) -2
-1
0
1
2 at 665.450 kb on + strand, within MPMX19_03317 at 665.450 kb on + strand, within MPMX19_03317 at 665.451 kb on - strand, within MPMX19_03317 at 665.451 kb on - strand, within MPMX19_03317 at 665.546 kb on + strand, within MPMX19_03317 at 665.589 kb on - strand, within MPMX19_03317 at 665.768 kb on + strand, within MPMX19_03317 at 665.768 kb on + strand, within MPMX19_03317 at 665.768 kb on + strand, within MPMX19_03317 at 665.768 kb on + strand, within MPMX19_03317 at 665.768 kb on + strand, within MPMX19_03317 at 665.768 kb on + strand, within MPMX19_03317 at 665.768 kb on + strand, within MPMX19_03317 at 665.768 kb on + strand, within MPMX19_03317 at 665.771 kb on + strand, within MPMX19_03317 at 665.771 kb on + strand, within MPMX19_03317 at 665.771 kb on + strand, within MPMX19_03317 at 665.771 kb on + strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.772 kb on - strand, within MPMX19_03317 at 665.786 kb on + strand, within MPMX19_03317 at 665.786 kb on + strand, within MPMX19_03317 at 665.787 kb on - strand, within MPMX19_03317 at 665.787 kb on - strand, within MPMX19_03317 at 665.787 kb on - strand, within MPMX19_03317 at 665.787 kb on - strand, within MPMX19_03317 at 665.828 kb on + strand, within MPMX19_03317 at 665.828 kb on + strand, within MPMX19_03317 at 665.828 kb on + strand, within MPMX19_03317 at 665.829 kb on - strand, within MPMX19_03317 at 665.859 kb on + strand, within MPMX19_03317 at 665.859 kb on + strand, within MPMX19_03317 at 665.859 kb on + strand, within MPMX19_03317 at 665.859 kb on + strand, within MPMX19_03317 at 665.859 kb on + strand, within MPMX19_03317 at 665.860 kb on - strand, within MPMX19_03317 at 665.861 kb on + strand, within MPMX19_03317 at 665.861 kb on + strand, within MPMX19_03317 at 665.861 kb on + strand, within MPMX19_03317 at 665.861 kb on + strand, within MPMX19_03317 at 665.861 kb on + strand, within MPMX19_03317 at 665.861 kb on + strand, within MPMX19_03317 at 665.862 kb on - strand, within MPMX19_03317 at 665.862 kb on - strand, within MPMX19_03317 at 665.862 kb on - strand, within MPMX19_03317 at 665.862 kb on - strand, within MPMX19_03317 at 665.862 kb on - strand, within MPMX19_03317 at 665.862 kb on - strand, within MPMX19_03317 at 665.876 kb on + strand, within MPMX19_03317 at 666.093 kb on + strand, within MPMX19_03317 at 666.173 kb on + strand, within MPMX19_03317 at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.269 kb on + strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.270 kb on - strand at 666.489 kb on + strand at 666.489 kb on + strand at 666.489 kb on + strand at 666.490 kb on - strand at 666.490 kb on - strand at 666.490 kb on - strand at 666.799 kb on + strand, within MPMX19_03318 at 666.799 kb on + strand, within MPMX19_03318 at 666.799 kb on + strand, within MPMX19_03318 at 666.799 kb on + strand, within MPMX19_03318 at 666.799 kb on + strand, within MPMX19_03318 at 666.800 kb on - strand, within MPMX19_03318 at 666.800 kb on - strand, within MPMX19_03318 at 666.800 kb on - strand, within MPMX19_03318 at 666.800 kb on - strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.112 kb on - strand, within MPMX19_03318 at 667.112 kb on - strand, within MPMX19_03318 at 667.112 kb on - strand, within MPMX19_03318 at 667.112 kb on - strand, within MPMX19_03318 at 667.123 kb on + strand, within MPMX19_03318 at 667.123 kb on + strand, within MPMX19_03318 at 667.123 kb on + strand, within MPMX19_03318 at 667.353 kb on + strand, within MPMX19_03318 at 667.353 kb on + strand, within MPMX19_03318 at 667.353 kb on + strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.450 kb on + strand, within MPMX19_03318 at 667.450 kb on + strand, within MPMX19_03318 at 667.450 kb on + strand, within MPMX19_03318 at 667.450 kb on + strand, within MPMX19_03318 at 667.451 kb on - strand, within MPMX19_03318 at 667.451 kb on - strand, within MPMX19_03318 at 667.451 kb on - strand, within MPMX19_03318 at 667.451 kb on - strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.768 kb on + strand at 667.768 kb on + strand at 667.768 kb on + strand at 667.768 kb on + strand at 667.768 kb on + strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.837 kb on + strand at 667.837 kb on + strand at 667.837 kb on + strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 665,450 + MPMX19_03317 0.22 +2.2 665,450 + MPMX19_03317 0.22 -0.8 665,451 - MPMX19_03317 0.23 +1.1 665,451 - MPMX19_03317 0.23 -0.6 665,546 + MPMX19_03317 0.31 +0.3 665,589 - MPMX19_03317 0.34 +0.4 665,768 + MPMX19_03317 0.49 -0.8 665,768 + MPMX19_03317 0.49 +0.7 665,768 + MPMX19_03317 0.49 -0.8 665,768 + MPMX19_03317 0.49 -0.5 665,768 + MPMX19_03317 0.49 -0.2 665,768 + MPMX19_03317 0.49 -1.2 665,768 + MPMX19_03317 0.49 -0.2 665,768 + MPMX19_03317 0.49 -1.3 665,771 + MPMX19_03317 0.50 -1.4 665,771 + MPMX19_03317 0.50 -1.5 665,771 + MPMX19_03317 0.50 +0.6 665,771 + MPMX19_03317 0.50 +0.1 665,772 - MPMX19_03317 0.50 -0.1 665,772 - MPMX19_03317 0.50 +0.8 665,772 - MPMX19_03317 0.50 -0.5 665,772 - MPMX19_03317 0.50 +0.2 665,772 - MPMX19_03317 0.50 +0.1 665,772 - MPMX19_03317 0.50 +0.1 665,772 - MPMX19_03317 0.50 -1.4 665,772 - MPMX19_03317 0.50 +1.2 665,772 - MPMX19_03317 0.50 -0.8 665,786 + MPMX19_03317 0.51 +0.2 665,786 + MPMX19_03317 0.51 +0.2 665,787 - MPMX19_03317 0.51 +0.9 665,787 - MPMX19_03317 0.51 -1.3 665,787 - MPMX19_03317 0.51 -0.3 665,787 - MPMX19_03317 0.51 -0.7 665,828 + MPMX19_03317 0.54 +0.9 665,828 + MPMX19_03317 0.54 -0.9 665,828 + MPMX19_03317 0.54 -0.3 665,829 - MPMX19_03317 0.54 +0.7 665,859 + MPMX19_03317 0.57 -1.5 665,859 + MPMX19_03317 0.57 -1.1 665,859 + MPMX19_03317 0.57 +0.6 665,859 + MPMX19_03317 0.57 +0.1 665,859 + MPMX19_03317 0.57 -0.4 665,860 - MPMX19_03317 0.57 +0.4 665,861 + MPMX19_03317 0.57 +1.1 665,861 + MPMX19_03317 0.57 -1.0 665,861 + MPMX19_03317 0.57 -0.2 665,861 + MPMX19_03317 0.57 -0.4 665,861 + MPMX19_03317 0.57 -0.3 665,861 + MPMX19_03317 0.57 -0.7 665,862 - MPMX19_03317 0.57 -1.1 665,862 - MPMX19_03317 0.57 -0.7 665,862 - MPMX19_03317 0.57 -0.5 665,862 - MPMX19_03317 0.57 +0.1 665,862 - MPMX19_03317 0.57 -0.6 665,862 - MPMX19_03317 0.57 +1.8 665,876 + MPMX19_03317 0.58 +0.8 666,093 + MPMX19_03317 0.77 -0.4 666,173 + MPMX19_03317 0.84 +0.1 666,269 + -1.6 666,269 + -1.0 666,269 + -0.1 666,269 + -0.8 666,269 + +0.8 666,269 + -1.1 666,269 + -0.2 666,269 + -0.1 666,269 + +0.3 666,269 + -0.8 666,269 + -0.2 666,269 + +1.5 666,269 + -1.7 666,269 + -0.2 666,269 + -0.6 666,269 + -0.2 666,269 + +0.2 666,269 + -1.7 666,269 + -0.6 666,269 + -2.6 666,269 + +0.4 666,269 + +0.6 666,269 + -0.4 666,269 + -1.3 666,269 + -0.4 666,269 + -0.9 666,269 + +0.2 666,269 + -2.1 666,270 - +0.5 666,270 - -1.2 666,270 - +0.1 666,270 - +0.2 666,270 - -0.9 666,270 - -0.6 666,270 - -0.1 666,270 - -0.8 666,270 - -0.5 666,270 - +0.2 666,270 - -1.2 666,270 - +0.1 666,270 - -0.1 666,270 - -0.5 666,489 + +0.7 666,489 + -1.1 666,489 + -1.7 666,490 - -0.4 666,490 - -1.1 666,490 - -0.8 666,799 + MPMX19_03318 0.25 -0.2 666,799 + MPMX19_03318 0.25 -0.0 666,799 + MPMX19_03318 0.25 -0.7 666,799 + MPMX19_03318 0.25 -0.8 666,799 + MPMX19_03318 0.25 -1.3 666,800 - MPMX19_03318 0.25 -2.1 666,800 - MPMX19_03318 0.25 +0.5 666,800 - MPMX19_03318 0.25 +0.6 666,800 - MPMX19_03318 0.25 -1.1 667,111 + MPMX19_03318 0.46 -0.3 667,111 + MPMX19_03318 0.46 -1.7 667,111 + MPMX19_03318 0.46 -1.1 667,111 + MPMX19_03318 0.46 -0.0 667,111 + MPMX19_03318 0.46 +0.8 667,111 + MPMX19_03318 0.46 +0.0 667,111 + MPMX19_03318 0.46 +1.8 667,111 + MPMX19_03318 0.46 +0.5 667,111 + MPMX19_03318 0.46 -1.5 667,112 - MPMX19_03318 0.46 +0.3 667,112 - MPMX19_03318 0.46 -0.2 667,112 - MPMX19_03318 0.46 +1.5 667,112 - MPMX19_03318 0.46 -2.0 667,123 + MPMX19_03318 0.47 -1.2 667,123 + MPMX19_03318 0.47 -0.3 667,123 + MPMX19_03318 0.47 +0.5 667,353 + MPMX19_03318 0.62 +0.0 667,353 + MPMX19_03318 0.62 -1.0 667,353 + MPMX19_03318 0.62 +0.2 667,354 - MPMX19_03318 0.62 -1.1 667,354 - MPMX19_03318 0.62 -1.2 667,354 - MPMX19_03318 0.62 -1.5 667,354 - MPMX19_03318 0.62 -0.1 667,354 - MPMX19_03318 0.62 -1.2 667,354 - MPMX19_03318 0.62 +0.2 667,450 + MPMX19_03318 0.69 +0.5 667,450 + MPMX19_03318 0.69 +0.3 667,450 + MPMX19_03318 0.69 -0.8 667,450 + MPMX19_03318 0.69 -1.1 667,451 - MPMX19_03318 0.69 -0.3 667,451 - MPMX19_03318 0.69 +0.2 667,451 - MPMX19_03318 0.69 +0.3 667,451 - MPMX19_03318 0.69 +1.6 667,708 + MPMX19_03318 0.86 -1.0 667,708 + MPMX19_03318 0.86 +0.7 667,708 + MPMX19_03318 0.86 -0.4 667,708 + MPMX19_03318 0.86 -0.1 667,708 + MPMX19_03318 0.86 -1.0 667,708 + MPMX19_03318 0.86 -1.0 667,708 + MPMX19_03318 0.86 -0.1 667,708 + MPMX19_03318 0.86 +0.8 667,709 - MPMX19_03318 0.86 +1.0 667,709 - MPMX19_03318 0.86 -0.2 667,709 - MPMX19_03318 0.86 -0.9 667,709 - MPMX19_03318 0.86 -0.7 667,709 - MPMX19_03318 0.86 +0.9 667,709 - MPMX19_03318 0.86 -0.1 667,768 + +1.1 667,768 + +0.3 667,768 + -0.1 667,768 + +0.7 667,768 + -1.5 667,769 - -2.1 667,769 - +0.8 667,769 - +0.3 667,769 - +0.5 667,769 - -1.0 667,769 - -1.1 667,837 + +0.3 667,837 + +0.6 667,837 + +1.2 667,838 - -0.8 667,838 - -0.1 667,838 - -0.3 667,838 - -0.9 667,838 - +0.1 667,838 - +1.1 667,838 - -0.5 668,383 + MPMX19_03319 0.22 -1.8 668,383 + MPMX19_03319 0.22 -0.4 668,383 + MPMX19_03319 0.22 -0.1 668,383 + MPMX19_03319 0.22 -0.0 668,383 + MPMX19_03319 0.22 -0.0 668,383 + MPMX19_03319 0.22 -1.6 668,383 + MPMX19_03319 0.22 -1.5 668,383 + MPMX19_03319 0.22 -0.4 668,383 + MPMX19_03319 0.22 -1.3 668,383 + MPMX19_03319 0.22 -0.4 668,383 + MPMX19_03319 0.22 -0.1 668,383 + MPMX19_03319 0.22 -0.3 668,384 - MPMX19_03319 0.22 +1.5 668,384 - MPMX19_03319 0.22 -0.4 668,384 - MPMX19_03319 0.22 -0.5 668,384 - MPMX19_03319 0.22 +0.5 668,384 - MPMX19_03319 0.22 -0.6 668,384 - MPMX19_03319 0.22 -0.5 668,384 - MPMX19_03319 0.22 +0.4 668,384 - MPMX19_03319 0.22 +0.5 668,384 - MPMX19_03319 0.22 +0.4 668,384 - MPMX19_03319 0.22 +0.2 668,384 - MPMX19_03319 0.22 -1.1 668,911 + MPMX19_03319 0.49 -0.8 668,911 + MPMX19_03319 0.49 -0.1 668,911 + MPMX19_03319 0.49 -0.1 668,911 + MPMX19_03319 0.49 +1.1 668,911 + MPMX19_03319 0.49 +0.8 668,911 + MPMX19_03319 0.49 -1.3 668,912 - MPMX19_03319 0.49 -0.2 668,912 - MPMX19_03319 0.49 -1.7 668,912 - MPMX19_03319 0.49 +0.7 668,912 - MPMX19_03319 0.49 +0.3 668,912 - MPMX19_03319 0.49 -0.5 668,912 - MPMX19_03319 0.49 -0.8 668,912 - MPMX19_03319 0.49 +0.8 668,912 - MPMX19_03319 0.49 -1.1
Or see this region's nucleotide sequence